Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L3V77_RS17185 Genome accession   NZ_CP091975
Coordinates   3745586..3747109 (-) Length   507 a.a.
NCBI ID   WP_275135186.1    Uniprot ID   -
Organism   Vibrio sp. DW001     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3740586..3752109
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V77_RS17160 (L3V77_17135) - 3741640..3741807 (+) 168 WP_195704717.1 hypothetical protein -
  L3V77_RS17165 (L3V77_17140) - 3741900..3742166 (+) 267 WP_195704718.1 YihD family protein -
  L3V77_RS17170 (L3V77_17145) ccoG 3742369..3743787 (+) 1419 WP_275135183.1 cytochrome c oxidase accessory protein CcoG -
  L3V77_RS17175 (L3V77_17150) - 3743848..3744864 (+) 1017 WP_275135184.1 serine/threonine protein kinase -
  L3V77_RS17180 (L3V77_17155) - 3744908..3745507 (+) 600 WP_275135185.1 thiol:disulfide interchange protein DsbA/DsbL -
  L3V77_RS17185 (L3V77_17160) comM 3745586..3747109 (-) 1524 WP_275135186.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L3V77_RS17190 (L3V77_17165) ilvG 3747533..3749179 (+) 1647 WP_275135187.1 acetolactate synthase 2 catalytic subunit -
  L3V77_RS17195 (L3V77_17170) ilvM 3749179..3749448 (+) 270 WP_195704724.1 acetolactate synthase 2 small subunit -
  L3V77_RS17200 (L3V77_17175) - 3749463..3750416 (+) 954 WP_275135188.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 55344.69 Da        Isoelectric Point: 6.9269

>NTDB_id=654805 L3V77_RS17185 WP_275135186.1 3745586..3747109(-) (comM) [Vibrio sp. DW001]
MVLAVIHSRASVGVDAPPVTVEVHISNGMPGFTLVGLPETTVKESRDRVRSAIINSNFEYPSKKITVNLAPADLPKEGGR
FDLPIALGILAAAEQIAVDKLSEYEFVGELALSGALRPVKGVLPAALAANKIQRCLVVPEENGDQAALVGKERHKSAASL
LEVCSALCGQDNLSLFQVERSEDKWVHSRDLQDVIGQQQGKRALEIAAAGGHNLLFLGPPGTGKTMLASRLCDLLPEMSD
DEALETASVASLTEQDINKFNWKKRPFRSPHHSSSMAALVGGGSIPRPGEISLAHNGLLFLDEMPEFERKVLDSMREPLE
SGEIVISRAAGKTRFPARFQLVGALNPSPTGYYDGDKARINPQVVLRYLSRLSGPLLDRFDMSLEIPLLPKGMLAEGGDR
GETTHVIKGRVEEARAYMLRRSGKINALLTSREIEKFCILDKQDAEFLEDALHRLGLSIRAYHRIIKVARTIADLESNEL
ISRAHLAEALGYRSMDRLLKLLNAQVI

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=654805 L3V77_RS17185 WP_275135186.1 3745586..3747109(-) (comM) [Vibrio sp. DW001]
ATGGTATTGGCGGTCATTCACAGCCGAGCAAGTGTTGGGGTAGACGCTCCTCCTGTCACTGTTGAGGTGCATATAAGCAA
TGGTATGCCAGGTTTTACACTTGTTGGCTTGCCTGAAACCACCGTAAAAGAGTCTAGGGATCGAGTTAGAAGCGCGATAA
TTAACTCAAATTTTGAGTACCCGAGCAAAAAGATCACAGTAAACCTTGCTCCTGCTGATTTACCTAAAGAGGGGGGACGA
TTTGATTTACCTATCGCGCTAGGGATCCTCGCGGCGGCTGAACAGATAGCCGTTGATAAACTTAGCGAATATGAGTTTGT
TGGTGAGTTAGCGCTTTCTGGGGCGTTACGCCCGGTCAAAGGTGTATTGCCTGCAGCGTTGGCGGCCAATAAAATTCAAC
GATGCTTAGTTGTACCTGAAGAAAATGGAGATCAAGCGGCATTGGTTGGCAAAGAGAGGCATAAATCCGCTGCAAGTTTG
TTGGAGGTGTGTTCGGCGTTATGCGGGCAAGATAACTTGTCTTTATTTCAGGTAGAAAGGTCCGAAGATAAGTGGGTGCA
CAGCCGAGATTTACAAGATGTCATTGGTCAGCAACAGGGAAAGAGAGCATTGGAGATAGCTGCGGCAGGTGGACATAATC
TTCTTTTTCTCGGTCCGCCAGGCACAGGAAAAACCATGCTAGCCTCTCGACTTTGTGACTTACTGCCTGAAATGAGTGAT
GACGAAGCGCTCGAAACGGCCTCTGTGGCTTCTTTAACGGAGCAAGACATAAATAAGTTTAATTGGAAGAAAAGACCTTT
TCGGTCTCCTCATCATTCATCTTCTATGGCGGCCTTAGTTGGTGGTGGTTCGATTCCTCGTCCAGGTGAGATTTCCTTGG
CACATAATGGATTGTTGTTCCTTGACGAAATGCCTGAATTTGAAAGAAAGGTGTTGGACTCAATGAGAGAGCCACTAGAG
TCTGGAGAGATTGTTATCTCTAGAGCGGCGGGAAAGACCCGTTTTCCAGCTCGATTCCAGCTCGTTGGAGCACTGAATCC
AAGTCCCACAGGTTATTATGATGGCGATAAGGCTCGGATAAACCCTCAGGTAGTACTTCGTTATCTGAGTCGGCTGTCGG
GGCCTCTATTGGATAGGTTTGATATGTCATTAGAGATCCCTTTATTGCCGAAAGGAATGCTAGCGGAAGGTGGAGATAGA
GGAGAAACTACCCATGTTATAAAGGGTAGGGTAGAAGAAGCCCGAGCGTATATGTTAAGAAGATCAGGAAAAATAAATGC
ACTTCTAACAAGTAGAGAAATAGAGAAATTTTGTATTTTGGACAAACAAGACGCCGAGTTTTTAGAAGATGCGCTACATA
GGTTAGGGTTATCAATACGTGCATATCATCGAATAATAAAGGTTGCTCGTACTATCGCTGATTTGGAGTCGAATGAACTA
ATTAGTCGAGCACACTTAGCTGAAGCGCTGGGGTACCGTTCTATGGATAGGTTATTGAAATTATTAAACGCTCAGGTGAT
CTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

81.46

100

0.815
  comM Vibrio cholerae strain A1552

81.46

100

0.815
  comM Glaesserella parasuis strain SC1401

63.851

100

0.641
  comM Haemophilus influenzae Rd KW20

63.116

100

0.631
  comM Legionella pneumophila str. Paris

48.795

98.225

0.479
  comM Legionella pneumophila strain ERS1305867

48.795

98.225

0.479
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.401

100

0.446