Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   L6494_RS15415 Genome accession   NZ_CP091913
Coordinates   3641447..3641812 (+) Length   121 a.a.
NCBI ID   WP_015139860.1    Uniprot ID   K9QWI0
Organism   Nostoc sp. UHCC 0870     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3636447..3646812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6494_RS15400 (L6494_15395) tilS 3636808..3637839 (+) 1032 WP_237988590.1 tRNA lysidine(34) synthetase TilS -
  L6494_RS15405 (L6494_15400) hmpF 3637982..3639733 (-) 1752 WP_237988591.1 pilus motility taxis protein HmpF -
  L6494_RS15410 (L6494_15405) - 3640090..3641232 (+) 1143 WP_237988592.1 response regulator -
  L6494_RS15415 (L6494_15410) pilH 3641447..3641812 (+) 366 WP_015139860.1 response regulator Machinery gene
  L6494_RS15420 (L6494_15415) - 3641826..3642356 (+) 531 WP_237988594.1 chemotaxis protein CheW -
  L6494_RS15425 (L6494_15420) - 3642373..3645285 (+) 2913 WP_237988595.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13396.51 Da        Isoelectric Point: 4.6926

>NTDB_id=654649 L6494_RS15415 WP_015139860.1 3641447..3641812(+) (pilH) [Nostoc sp. UHCC 0870]
MSTVLIVEDSLAQREMITDLLKASGLTVTHATDGLEALEAIQTEPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=654649 L6494_RS15415 WP_015139860.1 3641447..3641812(+) (pilH) [Nostoc sp. UHCC 0870]
ATGAGTACAGTTCTGATTGTGGAAGATAGTCTTGCCCAGAGAGAGATGATTACAGACCTCCTGAAAGCCAGTGGTTTAAC
AGTCACCCATGCCACTGACGGACTAGAAGCATTGGAGGCAATTCAAACTGAACCCCCTGACCTGGTGGTTTTGGATATTG
TCATGCCCCGAATGAATGGCTACGAAGTTTGCCGTCGATTAAAGTCCGACCCCAAAACCCAAAATGTTCCCGTGGTGATG
TGTTCTTCTAAAGGTGAAGAATTTGACCGCTACTGGGGCATGAAACAAGGGGCGGATGCTTACATAGCTAAACCGTTTCA
ACCGACCGAGTTGGTGGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB K9QWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

40

99.174

0.397
  vicR Streptococcus mutans UA159

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

40.351

94.215

0.38
  pilL-C Synechocystis sp. PCC 6803

37.19

100

0.372