Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   OG965_RS15560 Genome accession   NZ_CP108106
Coordinates   3467292..3467729 (-) Length   145 a.a.
NCBI ID   WP_371652673.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00224     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3462292..3472729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG965_RS15545 (OG965_15510) - 3462932..3463180 (+) 249 WP_371652670.1 hypothetical protein -
  OG965_RS15550 (OG965_15515) - 3463318..3464229 (-) 912 WP_371652671.1 YceI family protein -
  OG965_RS15555 (OG965_15520) - 3464671..3467295 (-) 2625 WP_371652672.1 ComEC/Rec2 family competence protein -
  OG965_RS15560 comEA/celA/cilE 3467292..3467729 (-) 438 WP_371652673.1 helix-hairpin-helix domain-containing protein Machinery gene
  OG965_RS15565 - 3468115..3468327 (+) 213 WP_371652674.1 hypothetical protein -
  OG965_RS15570 (OG965_15530) - 3468567..3469412 (-) 846 WP_371652675.1 DegV family protein -
  OG965_RS15575 (OG965_15535) - 3469584..3470420 (-) 837 WP_371652676.1 hypothetical protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 14503.42 Da        Isoelectric Point: 8.7897

>NTDB_id=653846 OG965_RS15560 WP_371652673.1 3467292..3467729(-) (comEA/celA/cilE) [Streptomyces sp. NBC_00224]
MVDVSGKVRRPGIRRLPPGSRVADALAAAGGVRDGVDVTGLNRARVLMDGEQVVVGVPGAVTGGAAPVAGGGGSAGAGAA
AGAPVSLSSATVDQLDALPGVGPVLAQHIVDYRAQHGGFRSVDELREVNGIGDRRFEDLRPLVRP

Nucleotide


Download         Length: 438 bp        

>NTDB_id=653846 OG965_RS15560 WP_371652673.1 3467292..3467729(-) (comEA/celA/cilE) [Streptomyces sp. NBC_00224]
GTGGTCGACGTCAGCGGCAAGGTGCGGCGACCGGGGATTCGCCGACTGCCGCCGGGGTCCAGGGTCGCGGACGCGCTGGC
TGCGGCGGGTGGGGTACGGGACGGAGTGGATGTCACCGGACTCAACCGGGCGCGGGTGCTCATGGACGGCGAGCAGGTGG
TCGTGGGCGTGCCCGGCGCGGTGACGGGCGGGGCCGCACCGGTGGCGGGCGGTGGGGGGAGCGCCGGGGCGGGTGCGGCG
GCGGGGGCGCCGGTCAGCCTGAGCTCCGCCACGGTGGATCAGCTCGACGCCCTGCCGGGGGTGGGTCCCGTGCTCGCCCA
GCACATCGTCGACTACCGCGCCCAGCACGGCGGTTTCCGGTCCGTCGACGAGTTACGGGAGGTCAATGGGATCGGTGACC
GCCGGTTCGAGGACCTCCGGCCCCTGGTGCGGCCATGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(84-144)

SLBB domain (SLBB)

(1-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

40.559

98.621

0.4
  comEA/celA/cilE Streptococcus pneumoniae Rx1

39.86

98.621

0.393
  comEA/celA/cilE Streptococcus pneumoniae D39

39.86

98.621

0.393
  comEA/celA/cilE Streptococcus pneumoniae R6

39.86

98.621

0.393
  comEA/celA/cilE Streptococcus mitis NCTC 12261

39.437

97.931

0.386
  comEA/celA/cilE Streptococcus mitis SK321

38.028

97.931

0.372