Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   K6119_RS09975 Genome accession   NZ_CP091819
Coordinates   2166248..2166697 (-) Length   149 a.a.
NCBI ID   WP_221839048.1    Uniprot ID   -
Organism   Paracrocinitomix mangrovi strain GM2-3-6-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2161248..2171697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6119_RS09960 (K6119_09960) - 2163264..2164304 (-) 1041 WP_221839045.1 sensor histidine kinase -
  K6119_RS09965 (K6119_09965) gldD 2164301..2164894 (-) 594 WP_221839046.1 gliding motility lipoprotein GldD -
  K6119_RS09970 (K6119_09970) gldE 2164878..2166158 (-) 1281 WP_255715272.1 gliding motility-associated protein GldE -
  K6119_RS09975 (K6119_09975) ssb 2166248..2166697 (-) 450 WP_221839048.1 single-stranded DNA-binding protein Machinery gene
  K6119_RS09980 (K6119_09980) mutY 2166797..2167834 (-) 1038 WP_221839050.1 A/G-specific adenine glycosylase -
  K6119_RS09985 (K6119_09985) - 2167933..2168223 (+) 291 WP_221839052.1 HU family DNA-binding protein -
  K6119_RS09990 (K6119_09990) - 2168552..2170102 (+) 1551 WP_221839055.1 Rne/Rng family ribonuclease -
  K6119_RS09995 (K6119_09995) - 2170107..2170571 (+) 465 WP_221839057.1 regulatory protein RecX -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16834.86 Da        Isoelectric Point: 4.5952

>NTDB_id=653779 K6119_RS09975 WP_221839048.1 2166248..2166697(-) (ssb) [Paracrocinitomix mangrovi strain GM2-3-6-6]
MAGSVNKVILIGNLGKDPEVRYLENGVSVARFPLATSESFTDKNTGEKREITDWHNIVLWRGLAKVAESYLKKGMKVYIE
GKLKTRSWQGEDQQMRYTTEIVADQMTMLSGKAEGDNNQQTNYPNSVEDNPVQKMDQDMTPEGDDDLPF

Nucleotide


Download         Length: 450 bp        

>NTDB_id=653779 K6119_RS09975 WP_221839048.1 2166248..2166697(-) (ssb) [Paracrocinitomix mangrovi strain GM2-3-6-6]
ATGGCAGGAAGCGTAAATAAAGTAATTCTCATAGGTAACCTGGGCAAAGATCCTGAGGTGAGATATTTGGAAAATGGAGT
ATCTGTTGCAAGATTTCCATTGGCTACATCAGAAAGTTTCACAGATAAAAATACCGGTGAAAAAAGAGAGATCACTGATT
GGCACAATATCGTGTTGTGGAGAGGATTAGCTAAAGTGGCTGAATCTTACCTTAAAAAGGGAATGAAAGTTTACATTGAG
GGTAAATTAAAAACCCGTTCATGGCAAGGTGAAGATCAACAAATGAGATACACTACCGAAATTGTTGCCGATCAAATGAC
CATGTTAAGCGGAAAAGCTGAAGGTGATAACAATCAGCAAACCAATTATCCTAACAGTGTGGAGGATAATCCGGTACAAA
AAATGGATCAGGATATGACTCCTGAAGGTGATGATGATCTGCCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

45.856

100

0.557
  ssb Vibrio cholerae strain A1552

55.263

76.51

0.423
  ssb Neisseria gonorrhoeae MS11

53.153

74.497

0.396
  ssb Neisseria meningitidis MC58

53.153

74.497

0.396
  ssbA Bacillus subtilis subsp. subtilis str. 168

33.714

100

0.396