Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG230_RS35755 Genome accession   NZ_CP108101
Coordinates   8152345..8153346 (-) Length   333 a.a.
NCBI ID   WP_328911632.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00234     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8147345..8158346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG230_RS35745 (OG230_35745) - 8147822..8150161 (-) 2340 WP_328907923.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OG230_RS35750 (OG230_35750) - 8150244..8152178 (-) 1935 WP_328907924.1 cellulase family glycosylhydrolase -
  OG230_RS35755 (OG230_35755) cytR 8152345..8153346 (-) 1002 WP_328911632.1 LacI family DNA-binding transcriptional regulator Regulator
  OG230_RS35760 (OG230_35760) - 8153463..8154290 (-) 828 WP_328907925.1 carbohydrate ABC transporter permease -
  OG230_RS35765 (OG230_35765) - 8154304..8155245 (-) 942 WP_328907926.1 sugar ABC transporter permease -
  OG230_RS35770 (OG230_35770) - 8155278..8156570 (-) 1293 WP_328907927.1 ABC transporter substrate-binding protein -
  OG230_RS35775 (OG230_35775) - 8156891..8157088 (-) 198 WP_328907928.1 peptidoglycan-binding domain-containing protein -
  OG230_RS35780 (OG230_35780) - 8157132..8157671 (-) 540 WP_328907929.1 GrpB family protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34830.71 Da        Isoelectric Point: 6.3927

>NTDB_id=653726 OG230_RS35755 WP_328911632.1 8152345..8153346(-) (cytR) [Streptomyces sp. NBC_00234]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLDAAAELGWSPSASASALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMAQESALYERLVAEGRIDGAVLTDARADDPRPQLLRDLGLPAVLLGTPDPGSPVPGVGLGQQ
DAGVREAVAHLLELGHRRVAYVAGPAELVHTGLRRAAFESALAEAGLRPVAVRHTDFTERAAVAVTEELLALPDRPTALV
FTNDSMAVCGIGTAQRAGLRVPEDVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARALLVRCGEDVPPPVLDGRPSL
VVRESTGPVPSAP

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=653726 OG230_RS35755 WP_328911632.1 8152345..8153346(-) (cytR) [Streptomyces sp. NBC_00234]
GTGGCCGCCGCGGCCGGGGTCTCCACCGCCGCGGTGTCCCAGGCCGTCAACGGCACCGGCCGGATATCGGAGGCCACCCG
CCGACGGGTCCTGGACGCGGCCGCCGAACTGGGCTGGTCGCCCAGCGCGTCGGCGTCCGCCCTGCGCCGGGCCCGTACCC
GTACGATCGCGCTCGTCGTCCGCCGCCCCACGGACGTGCTCGGCGCCGACCCTCACTTCAGCGAGCTGATCACCGGTCTG
GAGGGCGAACTGGCCCCCCGGGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGGCCCAGGAGAGCGCGCTGTACGA
ACGGCTGGTCGCGGAAGGCCGGATCGACGGTGCGGTCCTGACCGACGCGCGGGCGGACGACCCGCGCCCCCAACTGCTGC
GGGACCTCGGGCTGCCCGCCGTCCTGCTGGGTACGCCGGACCCCGGGTCGCCGGTGCCCGGCGTCGGCCTCGGGCAGCAG
GACGCCGGTGTCCGTGAGGCCGTCGCGCACCTGCTGGAGCTCGGCCACCGGCGTGTCGCGTACGTCGCGGGCCCGGCCGA
GCTGGTGCACACCGGGCTGCGCCGGGCCGCGTTCGAGAGTGCCCTCGCCGAAGCGGGGCTGCGGCCCGTCGCCGTACGGC
ACACCGATTTCACGGAGCGGGCGGCCGTCGCCGTCACCGAGGAACTGCTGGCGCTCCCCGACCGGCCGACCGCGCTGGTG
TTCACCAACGACTCCATGGCCGTCTGCGGCATCGGTACGGCGCAGCGCGCCGGGCTCAGGGTGCCCGAGGACGTGTCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGCTGGCTGCACCCCCGGCTCACGACCGTGGACCAGCAGGTGCAACGGGTCG
GCGCGGCCGCCGCCCGCGCGCTGCTCGTCCGGTGCGGGGAAGACGTACCCCCGCCGGTCCTCGACGGACGCCCGAGCCTG
GTCGTACGGGAGTCCACCGGTCCCGTACCGTCCGCGCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-42)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.036

100

0.36