Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L7H25_RS24830 Genome accession   NZ_CP091805
Coordinates   5122521..5124041 (+) Length   506 a.a.
NCBI ID   WP_268199034.1    Uniprot ID   -
Organism   Klebsiella quasipneumoniae strain 21223     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5117521..5129041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L7H25_RS24810 (L7H25_24805) ilvE 5119081..5120010 (-) 930 WP_002883171.1 branched-chain-amino-acid transaminase -
  L7H25_RS24815 (L7H25_24810) ilvM 5120027..5120284 (-) 258 WP_004886870.1 acetolactate synthase 2 small subunit -
  L7H25_RS24820 (L7H25_24815) ilvG 5120281..5121927 (-) 1647 WP_004886873.1 acetolactate synthase 2 catalytic subunit -
  L7H25_RS27620 ilvX 5121930..5121983 (-) 54 WP_201451426.1 peptide IlvX -
  L7H25_RS24825 (L7H25_24820) ilvL 5122068..5122166 (-) 99 WP_001311244.1 ilv operon leader peptide -
  L7H25_RS24830 (L7H25_24825) comM 5122521..5124041 (+) 1521 WP_268199034.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L7H25_RS24835 (L7H25_24830) - 5124066..5124404 (-) 339 WP_004886877.1 DUF413 domain-containing protein -
  L7H25_RS24840 (L7H25_24835) hdfR 5124523..5125344 (+) 822 WP_004886879.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55107.44 Da        Isoelectric Point: 8.1907

>NTDB_id=653726 L7H25_RS24830 WP_268199034.1 5122521..5124041(+) (comM) [Klebsiella quasipneumoniae strain 21223]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDLVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPTVDERGEDLRDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGLLPPLSNQ
EALESTAIQSLVNLHTAKTRWRQRPFRAPHHSASLAAMVGGGSIPVPGEISLAHNGVLFLDELPEFERRVLDALREPIES
GKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRTSPEQTLRYLGRLSGPFLDRFDLSLEIPLPPPGILSQGTQGE
ESSATVRQRVLAARERQMLRQNKLNAHLENREMKSCCHLRREDAVWLEQTLTQLGLSIRAWQRLLKVARTIADLAEAEEI
ERRHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=653726 L7H25_RS24830 WP_268199034.1 5122521..5124041(+) (comM) [Klebsiella quasipneumoniae strain 21223]
ATGTCGCTCGCCATCGTCTATACCCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACTGTCGAGGTTCATCTCAGCAA
CGGTCTGCCCGGTCTGACTATGGTCGGACTGCCGGAGACCACCGTGAAAGAGGCCCGTGACCTGGTTCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTCCCTGCGAAGAAAATAACCATTAACCTGGCGCCAGCGGATCTGCCTAAAGAGGGCGGGCGA
TACGATCTACCTATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTCACAGGTGGGTTACGCGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAAGCCATCAAAGCCGGCC
GGCGCATCGTCGTCTCCTCTGATAATGCGGCTGAGGTCGGCCTGATCGGCGGCAGCGATTGCCTGGTCGCCGACCATCTG
CAGGAGGTGTGTGCTTTTCTCGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCACCCACCGTTGATGAACGCGG
CGAAGATCTGCGCGATGTTATCGGCCAGCAGCAGGGCAAGCGAGCGCTGGAGATTGTGGCCGCCGGGGGTCACAACCTGC
TCCTGATCGGCCCACCCGGCACCGGGAAAACCATGCTTGCCAGCCGGCTACCCGGTCTCCTGCCGCCATTAAGCAATCAG
GAAGCCCTGGAGAGCACGGCCATTCAGAGCCTGGTCAATCTGCATACCGCGAAGACCCGGTGGCGTCAGAGGCCGTTTCG
CGCACCTCATCATAGCGCTTCGCTGGCAGCGATGGTGGGCGGCGGCTCGATACCGGTCCCCGGTGAGATTTCCCTGGCCC
ATAATGGCGTGCTGTTTCTTGATGAGCTGCCGGAGTTTGAGCGGCGTGTACTGGATGCGCTGCGCGAACCCATTGAGTCA
GGCAAGATCCATATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATCGCGGCAATGAACCCAAG
CCCGACAGGGCATTATCAGGGCAAACATAATCGTACATCGCCTGAGCAGACATTACGTTATCTGGGACGTCTGTCAGGCC
CCTTCCTTGACCGCTTCGATCTCTCCTTAGAGATCCCGCTGCCGCCGCCAGGGATACTGAGCCAGGGCACGCAGGGCGAA
GAGTCTAGCGCAACGGTCCGACAACGGGTGCTGGCGGCGCGCGAACGGCAAATGCTCAGACAAAATAAGCTCAATGCCCA
CCTTGAGAATCGTGAAATGAAGAGCTGCTGCCACTTACGGCGGGAGGACGCTGTCTGGCTGGAACAGACGCTAACGCAGC
TGGGGCTCTCTATACGAGCCTGGCAGCGTCTGTTAAAGGTGGCGAGAACCATTGCCGATCTGGCAGAGGCTGAAGAGATT
GAACGCCGTCATTTGCAGGAGGCGCTCAGCTATCGGGCGATAGACCGGATGCTAAACCATCTGCAGAAAATGATGGCGTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

60.274

100

0.609
  comM Glaesserella parasuis strain SC1401

59.528

100

0.599
  comM Vibrio campbellii strain DS40M4

59.524

99.605

0.593
  comM Vibrio cholerae strain A1552

59.642

99.407

0.593
  comM Legionella pneumophila str. Paris

49.698

98.221

0.488
  comM Legionella pneumophila strain ERS1305867

49.698

98.221

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.618

100

0.451