Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L6Y89_RS21560 Genome accession   NZ_CP091779
Coordinates   4555979..4557499 (+) Length   506 a.a.
NCBI ID   WP_120159889.1    Uniprot ID   A0A9Q7K057
Organism   Enterobacter mori strain ACYC.E9L     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4550979..4562499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6Y89_RS21540 (L6Y89_21540) ilvE 4552544..4553473 (-) 930 WP_014885677.1 branched-chain-amino-acid transaminase -
  L6Y89_RS21545 (L6Y89_21545) ilvM 4553492..4553755 (-) 264 WP_006179206.1 acetolactate synthase 2 small subunit -
  L6Y89_RS21550 (L6Y89_21550) ilvG 4553752..4555398 (-) 1647 WP_089599713.1 acetolactate synthase 2 catalytic subunit -
  L6Y89_RS21555 (L6Y89_21555) ilvL 4555538..4555636 (-) 99 WP_001311244.1 ilv operon leader peptide -
  L6Y89_RS21560 (L6Y89_21560) comM 4555979..4557499 (+) 1521 WP_120159889.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L6Y89_RS21565 (L6Y89_21565) - 4557529..4557867 (-) 339 WP_008501577.1 DUF413 domain-containing protein -
  L6Y89_RS21570 (L6Y89_21570) hdfR 4557986..4558807 (+) 822 WP_237845139.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55055.99 Da        Isoelectric Point: 6.9583

>NTDB_id=653618 L6Y89_RS21560 WP_120159889.1 4555979..4557499(+) (comM) [Enterobacter mori strain ACYC.E9L]
MSLSVVYTRAALGVKAPLISVEVHLSNGLPGLTLVGLPETTVKEARDRVRSAIINSGYTFPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLNTTRLGSYEFVGELALTGALRGVPGAISGALEAIRAGRQIIVANENASEVSLIAEKGCLIAGHL
QEVCAWLEGRHELSEPEECDDEVTDVPEDLSEIMGQEQGKRALEITAAGGHNLLLIGPPGTGKTMLASRLSGLLPPLNNH
EALESAAIYSLIGSTSLQKQWRRRPFRSPHHSASLTAMVGGGSIPGPGEISLAHNGILFLDELPEFERRVLDALREPIES
GEIHISRTRAKISYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLGKLSGPFLDRFDLSLEIPLPPPGILRQTGIQS
ECSTNVRERVIAAQARQYARQNRLNARLDNAGIRQFCSLNGEDAGWLEETLTRFGLSIRAWQRLLKVARTIADVEGCTDI
ERKHLQEALSYRAIDRLLLHLQKLLA

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=653618 L6Y89_RS21560 WP_120159889.1 4555979..4557499(+) (comM) [Enterobacter mori strain ACYC.E9L]
ATGTCACTGTCAGTTGTTTATACGCGTGCGGCTCTCGGGGTGAAGGCACCGCTGATTTCCGTAGAGGTTCATTTGAGTAA
TGGGCTGCCGGGACTCACGCTTGTCGGGCTACCGGAAACGACGGTTAAAGAGGCGAGGGATCGCGTTCGCAGCGCAATAA
TAAATAGCGGTTATACCTTCCCCGCAAAAAAGATCACCATCAACCTTGCCCCCGCCGATCTACCCAAAGAGGGGGGACGA
TACGATTTACCTATCGCGATTGCGCTTCTCGCGGCCTCTGAGCAGCTTAATACAACCAGGCTAGGCTCGTACGAGTTCGT
GGGCGAACTCGCGCTCACAGGCGCGTTAAGAGGCGTTCCCGGTGCAATATCCGGAGCGCTGGAGGCAATCCGTGCAGGGC
GGCAAATCATTGTCGCCAATGAAAACGCATCAGAGGTGAGTCTTATTGCAGAAAAGGGATGCCTCATAGCGGGGCATCTT
CAGGAAGTGTGTGCCTGGCTGGAAGGGCGACATGAGCTGTCCGAACCGGAAGAGTGTGACGATGAGGTAACGGATGTACC
AGAGGATCTCAGCGAGATTATGGGACAGGAGCAAGGGAAACGGGCGCTGGAGATCACGGCTGCGGGTGGACACAATCTTC
TGCTGATTGGCCCACCGGGTACGGGTAAAACCATGCTGGCGAGCAGGTTGAGTGGGTTGCTCCCACCGCTTAATAATCAT
GAAGCGCTGGAAAGCGCCGCGATATATAGCCTGATCGGTTCTACGTCGCTGCAAAAACAGTGGCGTCGACGTCCTTTTCG
TTCCCCGCATCATAGCGCTTCACTGACGGCAATGGTCGGCGGTGGGTCTATTCCGGGGCCGGGTGAGATCTCACTGGCGC
ACAATGGCATTCTGTTTCTCGATGAGCTGCCTGAATTTGAGCGCCGCGTGCTGGATGCACTGAGGGAACCCATTGAATCC
GGCGAGATACATATCTCACGCACGCGTGCCAAAATAAGCTACCCCGCCAGGTTTCAGCTCGTCGCGGCGATGAACCCCAG
CCCCACGGGACACTATCAGGGGAATCATAACCGCTGCACGCCAGAGCAGACGCTGCGCTATCTGGGAAAGCTGTCCGGCC
CGTTCCTCGATCGTTTCGATTTATCACTGGAAATCCCGCTTCCACCGCCTGGCATACTCAGGCAGACGGGTATACAGAGT
GAATGCTCTACGAATGTTCGCGAGCGGGTTATCGCGGCGCAGGCGCGACAGTATGCTCGTCAGAACAGACTGAATGCGCG
GCTGGATAATGCCGGGATCCGACAGTTTTGTTCACTTAACGGTGAGGATGCGGGGTGGCTGGAAGAGACGTTGACGCGGT
TTGGGCTGTCCATACGTGCGTGGCAGCGTCTGTTGAAAGTGGCCAGAACCATTGCTGACGTGGAGGGCTGTACTGACATT
GAAAGGAAACATTTGCAGGAAGCGCTGAGCTATCGCGCTATTGACCGTTTGCTGCTGCATCTGCAGAAGTTGCTGGCATA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.153

100

0.585
  comM Vibrio campbellii strain DS40M4

58.532

99.605

0.583
  comM Glaesserella parasuis strain SC1401

57.791

100

0.579
  comM Vibrio cholerae strain A1552

58.052

99.407

0.577
  comM Legionella pneumophila str. Paris

50.101

98.221

0.492
  comM Legionella pneumophila strain ERS1305867

50.101

98.221

0.492
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.984

100

0.441