Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L6Y89_RS01425 Genome accession   NZ_CP091779
Coordinates   297987..298517 (+) Length   176 a.a.
NCBI ID   WP_006177466.1    Uniprot ID   A0AAE4E8Q4
Organism   Enterobacter mori strain ACYC.E9L     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 292987..303517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L6Y89_RS01405 (L6Y89_01405) aphA 293310..294023 (+) 714 WP_237845330.1 acid phosphatase AphA -
  L6Y89_RS01410 (L6Y89_01410) - 294137..294553 (+) 417 WP_237845332.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  L6Y89_RS01415 (L6Y89_01415) - 294556..294909 (+) 354 WP_237845334.1 MmcQ/YjbR family DNA-binding protein -
  L6Y89_RS01420 (L6Y89_01420) uvrA 294913..297735 (-) 2823 WP_108418088.1 excinuclease ABC subunit UvrA -
  L6Y89_RS01425 (L6Y89_01425) ssb 297987..298517 (+) 531 WP_006177466.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L6Y89_RS01430 (L6Y89_01430) - 298578..298859 (-) 282 WP_003860282.1 YjcB family protein -
  L6Y89_RS01435 (L6Y89_01435) - 299508..301073 (+) 1566 WP_100167220.1 EAL domain-containing protein -
  L6Y89_RS01440 (L6Y89_01440) soxS 301080..301406 (-) 327 WP_013095071.1 superoxide response transcriptional regulator SoxS -
  L6Y89_RS01445 (L6Y89_01445) soxR 301505..301963 (+) 459 WP_089598624.1 redox-sensitive transcriptional activator SoxR -
  L6Y89_RS01450 (L6Y89_01450) - 302331..303002 (+) 672 WP_120159813.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18835.84 Da        Isoelectric Point: 5.2456

>NTDB_id=653603 L6Y89_RS01425 WP_006177466.1 297987..298517(+) (ssb) [Enterobacter mori strain ACYC.E9L]
MASRGVNKVILVGNLGQDPEVRYMPSGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLRTRKWTDQSGAEKYTTEVVVNVGGTMQMLGGRQGGGAPAGGGQNQQQGGWGQPQQPQGGNQFSGGAQSRPQQQSAP
APSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=653603 L6Y89_RS01425 WP_006177466.1 297987..298517(+) (ssb) [Enterobacter mori strain ACYC.E9L]
ATGGCCAGCAGAGGCGTAAACAAGGTGATTCTCGTCGGTAATCTGGGCCAGGACCCGGAAGTACGCTACATGCCGAGTGG
TGGTGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGTGAGATGAAAGAGCAGACCG
AATGGCACCGCGTTGTGCTGTTTGGCAAACTGGCCGAAGTGGCCGGTGAATATCTGCGTAAAGGTTCTCAGGTCTATATC
GAAGGCCAGCTGCGTACCCGCAAATGGACCGATCAGTCCGGCGCTGAGAAGTACACCACGGAAGTCGTGGTGAACGTGGG
CGGCACCATGCAGATGCTGGGTGGCCGTCAGGGCGGTGGCGCACCGGCAGGTGGCGGTCAGAACCAGCAGCAGGGCGGTT
GGGGTCAGCCTCAGCAGCCGCAGGGCGGCAACCAGTTCAGCGGCGGCGCGCAGTCTCGTCCGCAGCAGCAGTCTGCGCCA
GCCCCGTCTAACGAACCGCCAATGGATTTCGACGACGACATTCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.667

100

0.784
  ssb Glaesserella parasuis strain SC1401

56.216

100

0.591
  ssb Neisseria meningitidis MC58

46.629

100

0.472
  ssb Neisseria gonorrhoeae MS11

46.629

100

0.472
  ssbA Bacillus subtilis subsp. subtilis str. 168

35.556

100

0.364