Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG259_RS00545 Genome accession   NZ_CP108088
Coordinates   114239..115231 (-) Length   330 a.a.
NCBI ID   WP_328940332.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00250     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 109239..120231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG259_RS00520 (OG259_00520) - 109658..110590 (-) 933 WP_328940327.1 NADP-dependent oxidoreductase -
  OG259_RS00525 (OG259_00525) - 110685..111620 (+) 936 WP_328940328.1 AraC family transcriptional regulator -
  OG259_RS00530 (OG259_00530) - 111891..112439 (-) 549 WP_328940329.1 DUF1062 domain-containing protein -
  OG259_RS00535 (OG259_00535) - 112976..113713 (+) 738 WP_328940330.1 hypothetical protein -
  OG259_RS00540 (OG259_00540) - 113824..114276 (+) 453 WP_328940331.1 hypothetical protein -
  OG259_RS00545 (OG259_00545) cytR 114239..115231 (-) 993 WP_328940332.1 LacI family DNA-binding transcriptional regulator Regulator
  OG259_RS00550 (OG259_00550) - 115581..117311 (+) 1731 WP_328940333.1 discoidin domain-containing protein -
  OG259_RS00555 (OG259_00555) - 117354..118724 (+) 1371 WP_328940334.1 DUF1996 domain-containing protein -
  OG259_RS00560 (OG259_00560) - 118700..119254 (+) 555 WP_328940335.1 DUF305 domain-containing protein -
  OG259_RS00565 (OG259_00565) - 119385..119999 (+) 615 Protein_112 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35270.26 Da        Isoelectric Point: 6.2989

>NTDB_id=653246 OG259_RS00545 WP_328940332.1 114239..115231(-) (cytR) [Streptomyces sp. NBC_00250]
MKRPTLEVVAARAGVSKSSVSRVVNGEATVAPEIRDVVMRAVRELGYVPNAAARNLVTRRTDAVAVVVSDPPQGVVSDDP
LFATVVRAVSRELEAAGKQVVLMLAESDRSRARVEQYVAGGHVDGVMLIALHGTDPLPAALARTGLPTASFNRTNAPDVP
YVGLDNASGAALAVRHLLERGRRRIAVITGPLELYESRERLDGYRDALRDTGRRSIVALGDFTRVSGAEAMRQLLDDDPA
LDAVFASNDLMAIGALRTLREAGRRVPEDVAVVGFDDIEAASYTTPALTSVRSPMADQARATVRLLLGLIEGGPREPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=653246 OG259_RS00545 WP_328940332.1 114239..115231(-) (cytR) [Streptomyces sp. NBC_00250]
ATGAAACGACCCACGCTGGAAGTGGTCGCCGCGCGCGCGGGCGTGTCCAAGTCGAGCGTCTCCCGTGTCGTCAACGGCGA
GGCGACAGTGGCGCCGGAGATCCGCGACGTCGTCATGCGGGCCGTGCGCGAGCTCGGATACGTGCCCAACGCCGCCGCCC
GGAACCTGGTGACGCGCAGGACCGACGCCGTGGCCGTGGTCGTCTCCGACCCCCCACAGGGCGTCGTCTCCGACGATCCC
CTGTTCGCCACCGTCGTGCGCGCCGTGAGCCGGGAACTGGAGGCCGCGGGCAAACAGGTCGTGCTCATGCTGGCCGAGTC
CGACCGCAGCCGGGCCAGAGTCGAGCAGTACGTCGCCGGGGGGCACGTGGACGGCGTCATGCTGATCGCCCTGCACGGTA
CCGACCCGCTGCCGGCGGCACTGGCCAGGACCGGCCTGCCCACGGCCTCGTTCAACCGCACCAACGCACCGGACGTCCCG
TACGTGGGCCTGGACAACGCGAGCGGCGCGGCCCTGGCCGTCCGGCACCTGCTGGAGCGGGGCCGACGCCGCATCGCCGT
CATCACCGGACCACTGGAGCTCTACGAGTCCCGGGAGCGCCTCGACGGCTACCGGGACGCGCTGCGCGACACCGGGCGCC
GGTCGATCGTCGCGCTGGGCGACTTCACCAGGGTCTCCGGGGCCGAGGCCATGCGTCAACTCCTCGACGACGACCCCGCG
TTGGACGCCGTGTTCGCGAGCAACGACTTGATGGCGATCGGGGCCCTGCGCACCCTGCGGGAGGCGGGCCGCCGGGTCCC
CGAGGACGTCGCCGTCGTCGGCTTCGACGACATCGAAGCCGCCTCGTACACCACTCCGGCACTCACCTCCGTACGCAGCC
CCATGGCGGACCAGGCCAGGGCGACGGTCCGGCTCCTGCTGGGACTGATCGAAGGCGGTCCCAGAGAACCTGTGATCATG
CCGAACGAGCTGGTGGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.86

100

0.373