Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   L5465_RS12395 Genome accession   NZ_CP091596
Coordinates   2466172..2466912 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain Nord4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2461172..2471912
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5465_RS12380 (L5465_12380) ponA 2461759..2464314 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  L5465_RS12385 (L5465_12385) pilM 2464476..2465534 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  L5465_RS12390 (L5465_12390) pilN 2465534..2466175 (+) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  L5465_RS12395 (L5465_12395) pilO 2466172..2466912 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L5465_RS12400 (L5465_12400) pilP 2466923..2467450 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  L5465_RS12405 (L5465_12405) pilQ 2467513..2469678 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  L5465_RS12410 (L5465_12410) aroK 2469717..2470313 (+) 597 WP_313902375.1 shikimate kinase AroK -
  L5465_RS12415 (L5465_12415) aroB 2470289..2471371 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=652655 L5465_RS12395 WP_000076101.1 2466172..2466912(+) (pilO) [Acinetobacter baumannii strain Nord4-2]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=652655 L5465_RS12395 WP_000076101.1 2466172..2466912(+) (pilO) [Acinetobacter baumannii strain Nord4-2]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683