Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   L5465_RS12390 Genome accession   NZ_CP091596
Coordinates   2465534..2466175 (+) Length   213 a.a.
NCBI ID   WP_000201221.1    Uniprot ID   A0A5P1AXR1
Organism   Acinetobacter baumannii strain Nord4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2460534..2471175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5465_RS12370 (L5465_12370) - 2460582..2460914 (+) 333 WP_000169599.1 DUF7709 family protein -
  L5465_RS12375 (L5465_12375) - 2460917..2461741 (+) 825 WP_002019666.1 putative RNA methyltransferase -
  L5465_RS12380 (L5465_12380) ponA 2461759..2464314 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  L5465_RS12385 (L5465_12385) pilM 2464476..2465534 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  L5465_RS12390 (L5465_12390) pilN 2465534..2466175 (+) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  L5465_RS12395 (L5465_12395) pilO 2466172..2466912 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L5465_RS12400 (L5465_12400) pilP 2466923..2467450 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  L5465_RS12405 (L5465_12405) pilQ 2467513..2469678 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  L5465_RS12410 (L5465_12410) aroK 2469717..2470313 (+) 597 WP_313902375.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24023.34 Da        Isoelectric Point: 5.3968

>NTDB_id=652654 L5465_RS12390 WP_000201221.1 2465534..2466175(+) (pilN) [Acinetobacter baumannii strain Nord4-2]
MATINLLPWREELREQRKKQFITFCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKPSTGESVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=652654 L5465_RS12390 WP_000201221.1 2465534..2466175(+) (pilN) [Acinetobacter baumannii strain Nord4-2]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTTTGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGGCTTGTTGATGAGTTAGTTCG
AGTCACGCCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGCCATCTACAGGTGAAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P1AXR1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

73.077

97.653

0.714