Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   L5465_RS12400 Genome accession   NZ_CP091596
Coordinates   2466923..2467450 (+) Length   175 a.a.
NCBI ID   WP_000695061.1    Uniprot ID   A0A506J6X2
Organism   Acinetobacter baumannii strain Nord4-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2461923..2472450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L5465_RS12385 (L5465_12385) pilM 2464476..2465534 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  L5465_RS12390 (L5465_12390) pilN 2465534..2466175 (+) 642 WP_000201221.1 PilN domain-containing protein Machinery gene
  L5465_RS12395 (L5465_12395) pilO 2466172..2466912 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  L5465_RS12400 (L5465_12400) pilP 2466923..2467450 (+) 528 WP_000695061.1 pilus assembly protein PilP Machinery gene
  L5465_RS12405 (L5465_12405) pilQ 2467513..2469678 (+) 2166 WP_001017029.1 type IV pilus secretin PilQ family protein Machinery gene
  L5465_RS12410 (L5465_12410) aroK 2469717..2470313 (+) 597 WP_313902375.1 shikimate kinase AroK -
  L5465_RS12415 (L5465_12415) aroB 2470289..2471371 (+) 1083 WP_001194249.1 3-dehydroquinate synthase -
  L5465_RS12420 (L5465_12420) - 2471387..2472262 (+) 876 WP_000218813.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19445.72 Da        Isoelectric Point: 8.9898

>NTDB_id=652656 L5465_RS12400 WP_000695061.1 2466923..2467450(+) (pilP) [Acinetobacter baumannii strain Nord4-2]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRIIHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=652656 L5465_RS12400 WP_000695061.1 2466923..2467450(+) (pilP) [Acinetobacter baumannii strain Nord4-2]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GCATGAATCAGGGCCGTATTATCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A506J6X2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.857

100

0.989
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714