Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG798_RS29195 Genome accession   NZ_CP108070
Coordinates   6389552..6390226 (+) Length   224 a.a.
NCBI ID   WP_054231356.1    Uniprot ID   A0A1I2VSL8
Organism   Streptomyces sp. NBC_00271     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6384552..6395226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG798_RS29175 (OG798_29260) - 6384687..6385565 (+) 879 WP_095853455.1 alpha/beta hydrolase -
  OG798_RS29180 (OG798_29265) - 6385705..6386823 (+) 1119 WP_328757926.1 alpha/beta hydrolase -
  OG798_RS29185 (OG798_29270) - 6386960..6388138 (+) 1179 WP_121415488.1 acyltransferase -
  OG798_RS29190 (OG798_29275) - 6388245..6389555 (+) 1311 WP_328760092.1 sensor histidine kinase -
  OG798_RS29195 (OG798_29280) vraR 6389552..6390226 (+) 675 WP_054231356.1 response regulator transcription factor Regulator
  OG798_RS29200 (OG798_29285) - 6390396..6391745 (+) 1350 WP_179436486.1 histidine kinase -
  OG798_RS29205 (OG798_29290) vraR 6391742..6392416 (+) 675 WP_095853451.1 response regulator transcription factor Regulator
  OG798_RS29210 (OG798_29295) - 6392543..6393790 (+) 1248 WP_328757927.1 cytochrome P450 -
  OG798_RS29215 (OG798_29300) - 6393774..6394013 (-) 240 WP_267062443.1 hypothetical protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24187.84 Da        Isoelectric Point: 4.7304

>NTDB_id=652656 OG798_RS29195 WP_054231356.1 6389552..6390226(+) (vraR) [Streptomyces sp. NBC_00271]
MTSSTIRVLIADDQQMVRQGFTVLLNTQPDIEVVGQAVDGLDAIAKVAELAPDVVLMDIRMPELGGIDATRRITGETPHI
KVLVLTTFDLDEYVYEALRAGASGFLLKDASADQLAEAVRVVAAGDALLAPGITRRLIAEFSRLDSTPRAPLKQRVGELT
ERETEVLALIAQGLSNAEIAERLVVAEQTVKTHVGRILVKLGLRDRTQAAVFAYESGLVRPSGY

Nucleotide


Download         Length: 675 bp        

>NTDB_id=652656 OG798_RS29195 WP_054231356.1 6389552..6390226(+) (vraR) [Streptomyces sp. NBC_00271]
ATGACGAGCAGCACCATCCGCGTACTGATCGCCGATGACCAGCAGATGGTCCGCCAGGGTTTCACCGTGCTGCTCAACAC
CCAGCCCGACATCGAGGTGGTCGGCCAGGCGGTCGACGGCCTGGACGCGATCGCCAAGGTCGCCGAACTCGCCCCGGACG
TCGTGCTGATGGACATCCGCATGCCCGAGCTGGGCGGCATCGACGCGACCAGACGCATCACCGGCGAGACCCCGCACATC
AAGGTGCTGGTGCTCACGACCTTCGACCTCGACGAGTACGTGTACGAGGCGCTGCGGGCCGGCGCCTCCGGGTTCCTGCT
CAAGGACGCGTCCGCCGACCAGCTGGCCGAGGCGGTACGGGTGGTGGCGGCGGGCGACGCGCTGCTCGCCCCCGGGATCA
CCCGCCGTCTCATCGCCGAGTTCTCCCGCCTGGACTCCACACCCCGCGCCCCGCTCAAGCAGCGCGTGGGCGAGCTGACC
GAGCGGGAGACGGAGGTGCTGGCCCTCATCGCGCAGGGCCTGTCGAACGCGGAGATCGCCGAGCGCCTGGTCGTCGCCGA
GCAGACCGTGAAGACCCATGTGGGCCGCATCCTGGTGAAGCTGGGCCTGCGCGACCGCACCCAGGCCGCGGTCTTCGCCT
ACGAGTCGGGCCTCGTGCGCCCGTCCGGCTACTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(8-120)

Bacterial regulatory proteins, luxR family (GerE)

(159-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1I2VSL8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.833

96.429

0.442
  degU Bacillus subtilis subsp. subtilis str. 168

41.333

100

0.415