Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ77_RS02760 Genome accession   NZ_CP091521
Coordinates   565523..567028 (-) Length   501 a.a.
NCBI ID   WP_027008998.1    Uniprot ID   -
Organism   Conchiformibius kuhniae strain 17694     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 560523..572028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ77_RS02735 (LVJ77_00610) prmA 560892..561788 (-) 897 WP_027009003.1 50S ribosomal protein L11 methyltransferase -
  LVJ77_RS02740 (LVJ77_00605) rpsT 561988..562251 (+) 264 WP_027009002.1 30S ribosomal protein S20 -
  LVJ77_RS02745 (LVJ77_00600) - 562320..563147 (-) 828 WP_027009001.1 undecaprenyl-diphosphate phosphatase -
  LVJ77_RS02750 (LVJ77_00595) - 563451..564158 (-) 708 WP_034334271.1 thiol:disulfide interchange protein DsbA/DsbL -
  LVJ77_RS02755 (LVJ77_00590) - 564285..565379 (-) 1095 WP_027008999.1 SPOR domain-containing protein -
  LVJ77_RS02760 (LVJ77_00585) comM 565523..567028 (-) 1506 WP_027008998.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ77_RS02765 (LVJ77_00580) - 567032..567382 (-) 351 WP_051255537.1 accessory factor UbiK family protein -
  LVJ77_RS02770 (LVJ77_00570) - 567451..567744 (-) 294 WP_027008997.1 excalibur calcium-binding domain-containing protein -
  LVJ77_RS02775 (LVJ77_00565) - 567910..568284 (+) 375 WP_027008996.1 helix-turn-helix domain-containing protein -
  LVJ77_RS02780 (LVJ77_00560) - 568337..569143 (-) 807 WP_034334337.1 DsbC family protein -
  LVJ77_RS02785 (LVJ77_00555) - 569360..570160 (+) 801 WP_027008994.1 3'-5' exonuclease -
  LVJ77_RS02790 (LVJ77_00550) folP 570191..571033 (-) 843 WP_376986838.1 dihydropteroate synthase -
  LVJ77_RS02795 (LVJ77_00545) - 571174..571707 (-) 534 WP_156900774.1 hypothetical protein -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 52806.65 Da        Isoelectric Point: 9.2260

>NTDB_id=652032 LVJ77_RS02760 WP_027008998.1 565523..567028(-) (comM) [Conchiformibius kuhniae strain 17694]
MSFALVYSRALCGTDAPLVEVEAHLGNGLPQFHLVGLPDTEVKESRDRVRAAIVQSGFEFPAKKITVNLAPADLPKESGR
FDLPVALGILAASGQLAADGLARYEFAGELALSGRLRAVRGALAMVRQGRLAGRAFVLPADNAAQAAVSDGAEVYGAADL
RAVAAHLSGAALLPRVRAGAPVSLPSVPLPDLGDVKGQHTARLALEIAAAGAHSLLMVGPPGTGKSMLAQRLPGILPPLS
EEERVAVWTLRSLLPQTQQQEEALLQQRPFRSPHHSASAAALVGGGSDPRPGEISLAHCGVLFLDELPEFERRVLEMLRE
PLESGVVHIARANRRAVFPAAFQLVAAMNPCPCGYLGHPSKPCRCSPESVRRYRDKISGPLLDRIDLTIEVPALSAAELT
HTRAGESSAAVAARVAAARQRQNARQGKTNAALSPAELDGEAAGIGSEARQTLAAVLERLSLSARSYHRILRVARTVADL
AGDDTVTRAHILKAVGLRRGL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=652032 LVJ77_RS02760 WP_027008998.1 565523..567028(-) (comM) [Conchiformibius kuhniae strain 17694]
ATGTCGTTTGCTTTGGTGTACAGCCGCGCTCTGTGCGGTACGGACGCGCCTTTGGTGGAGGTGGAGGCGCATTTGGGCAA
CGGTTTGCCGCAGTTTCATTTGGTGGGCTTGCCCGATACGGAGGTGAAGGAAAGCCGCGACCGTGTCCGTGCTGCCATCG
TGCAGAGCGGTTTTGAATTTCCCGCCAAGAAAATCACGGTGAATCTGGCACCTGCGGATTTGCCGAAGGAGTCGGGGCGG
TTTGATTTGCCGGTGGCGTTGGGAATTTTGGCGGCTTCGGGGCAGCTTGCCGCCGATGGTTTGGCGCGTTATGAGTTTGC
GGGGGAGTTGGCGTTGTCGGGCAGGTTGCGGGCGGTGCGCGGGGCGTTGGCGATGGTGCGGCAGGGGCGGTTGGCAGGGC
GGGCGTTCGTGCTGCCCGCCGACAATGCGGCACAGGCGGCGGTGTCGGACGGTGCGGAAGTTTACGGTGCGGCGGATTTG
CGGGCGGTGGCGGCGCATTTGTCGGGAGCAGCGTTGCTGCCGCGCGTGCGTGCCGGTGCGCCGGTGTCGTTGCCGTCTGT
GCCTTTGCCCGATTTGGGCGATGTCAAAGGGCAGCACACGGCGCGTTTGGCATTGGAAATTGCGGCGGCGGGGGCGCACA
GTCTGCTGATGGTGGGGCCGCCCGGCACGGGCAAATCGATGCTGGCGCAACGTTTGCCGGGCATTCTGCCGCCCTTGAGC
GAGGAAGAGCGCGTGGCGGTGTGGACTTTACGTTCGCTGCTGCCGCAAACGCAGCAGCAGGAAGAAGCCTTGCTGCAACA
ACGCCCGTTCCGCAGCCCGCACCACAGTGCCAGCGCGGCGGCGCTGGTCGGCGGCGGTTCCGACCCGCGTCCGGGCGAAA
TTTCACTGGCGCATTGCGGCGTGTTGTTTTTGGACGAATTGCCCGAGTTTGAACGGCGCGTGTTGGAAATGCTGCGCGAG
CCTTTGGAAAGCGGCGTGGTGCATATTGCCCGTGCCAACCGCCGCGCCGTGTTTCCCGCCGCCTTCCAACTGGTTGCCGC
GATGAATCCCTGCCCTTGCGGTTATTTGGGACATCCGTCCAAGCCCTGCCGTTGCAGCCCCGAGAGCGTGCGCCGTTACC
GCGACAAAATTTCCGGCCCCTTGCTCGACCGCATCGACCTGACCATCGAAGTCCCCGCCCTTTCCGCCGCCGAGCTGACC
CATACCCGAGCCGGCGAAAGCAGCGCGGCGGTGGCGGCACGGGTAGCGGCGGCGCGGCAACGCCAAAACGCACGGCAGGG
CAAAACTAATGCCGCCCTGTCGCCCGCCGAGCTGGATGGCGAAGCGGCGGGCATCGGCAGCGAAGCGCGGCAAACACTGG
CAGCCGTATTGGAACGACTGTCGCTGTCGGCACGCAGCTACCACCGCATTTTGCGCGTGGCGCGGACGGTGGCGGACTTG
GCGGGCGACGACACGGTAACACGCGCCCACATACTCAAAGCCGTGGGCTTGCGGCGCGGCTTGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-398)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.906

99.601

0.527
  comM Vibrio campbellii strain DS40M4

51.8

99.8

0.517
  comM Haemophilus influenzae Rd KW20

49.405

100

0.497
  comM Glaesserella parasuis strain SC1401

48.713

100

0.491
  comM Legionella pneumophila str. Paris

46.838

100

0.473
  comM Legionella pneumophila strain ERS1305867

46.838

100

0.473
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.141

100

0.433