Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ80_RS12245 Genome accession   NZ_CP091519
Coordinates   2377973..2379469 (-) Length   498 a.a.
NCBI ID   WP_034295356.1    Uniprot ID   A0A376BWB8
Organism   Alysiella crassa strain S6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2362969..2397433 2377973..2379469 within 0


Gene organization within MGE regions


Location: 2362969..2397433
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ80_RS12155 (LVJ80_12575) hprK 2363224..2364198 (+) 975 WP_034292037.1 HPr(Ser) kinase/phosphatase -
  LVJ80_RS12160 (LVJ80_12570) - 2364328..2364846 (+) 519 WP_034292039.1 GbsR/MarR family transcriptional regulator -
  LVJ80_RS12165 (LVJ80_12565) - 2364880..2365653 (+) 774 WP_034292042.1 hypothetical protein -
  LVJ80_RS12170 (LVJ80_12560) - 2365776..2366147 (+) 372 WP_034292045.1 DoxX-like family protein -
  LVJ80_RS12175 (LVJ80_12555) - 2366144..2366626 (+) 483 WP_034292046.1 DUF2269 domain-containing protein -
  LVJ80_RS12180 (LVJ80_12550) - 2366725..2367111 (+) 387 WP_034292048.1 thiol-disulfide oxidoreductase DCC family protein -
  LVJ80_RS12185 (LVJ80_12545) - 2367186..2367593 (+) 408 WP_034292050.1 thiol-disulfide oxidoreductase DCC family protein -
  LVJ80_RS12190 (LVJ80_12540) - 2367628..2368032 (+) 405 WP_034292052.1 hypothetical protein -
  LVJ80_RS12195 (LVJ80_12535) - 2368174..2369010 (+) 837 WP_034292054.1 NAD-dependent epimerase/dehydratase family protein -
  LVJ80_RS12200 (LVJ80_12530) - 2369113..2369673 (+) 561 WP_034292056.1 DUF2059 domain-containing protein -
  LVJ80_RS12205 (LVJ80_12525) - 2369781..2370608 (+) 828 WP_244773089.1 hypothetical protein -
  LVJ80_RS12210 (LVJ80_12520) ychF 2370788..2371879 (+) 1092 WP_034292059.1 redox-regulated ATPase YchF -
  LVJ80_RS12215 (LVJ80_12515) - 2372017..2373099 (+) 1083 WP_115723581.1 IS4 family transposase -
  LVJ80_RS12220 (LVJ80_12510) - 2373325..2374743 (+) 1419 WP_172540030.1 SPFH domain-containing protein -
  LVJ80_RS12225 (LVJ80_12505) - 2374958..2375782 (-) 825 WP_034295352.1 undecaprenyl-diphosphate phosphatase -
  LVJ80_RS12230 (LVJ80_12500) - 2375857..2376561 (-) 705 WP_034295354.1 thiol:disulfide interchange protein DsbA/DsbL -
  LVJ80_RS12235 (LVJ80_15655) - 2376560..2376688 (+) 129 WP_377896412.1 hypothetical protein -
  LVJ80_RS12240 (LVJ80_12495) - 2376668..2377813 (-) 1146 WP_051968623.1 SPOR domain-containing protein -
  LVJ80_RS12245 (LVJ80_12490) comM 2377973..2379469 (-) 1497 WP_034295356.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ80_RS12250 (LVJ80_12485) - 2379466..2379789 (-) 324 WP_034295358.1 accessory factor UbiK family protein -
  LVJ80_RS12255 (LVJ80_12480) - 2379881..2380396 (-) 516 WP_051968624.1 hypothetical protein -
  LVJ80_RS12260 (LVJ80_12475) - 2380566..2380730 (+) 165 WP_156961074.1 hypothetical protein -
  LVJ80_RS12265 (LVJ80_12470) trpC 2380769..2381551 (-) 783 WP_034295360.1 indole-3-glycerol phosphate synthase TrpC -
  LVJ80_RS12270 (LVJ80_15660) - 2381598..2381726 (-) 129 WP_280517499.1 hypothetical protein -
  LVJ80_RS12275 (LVJ80_12465) - 2381995..2383185 (+) 1191 WP_034295331.1 amino acid aminotransferase -
  LVJ80_RS12280 (LVJ80_12460) - 2383328..2383777 (+) 450 WP_115723720.1 s-adenosyl-L-methionine-dependent methyltransferase -
  LVJ80_RS12285 (LVJ80_12455) - 2384021..2385088 (-) 1068 WP_034295335.1 tyrosine-type recombinase/integrase -
  LVJ80_RS12290 (LVJ80_12450) - 2385173..2385427 (-) 255 WP_034295337.1 DUF4224 domain-containing protein -
  LVJ80_RS12295 (LVJ80_12445) - 2385424..2385840 (-) 417 WP_034295339.1 hypothetical protein -
  LVJ80_RS12300 (LVJ80_12440) - 2385824..2386195 (-) 372 WP_034295341.1 hypothetical protein -
  LVJ80_RS12305 (LVJ80_12435) - 2386212..2387177 (-) 966 WP_034295343.1 hypothetical protein -
  LVJ80_RS12310 (LVJ80_12430) - 2387189..2387671 (-) 483 WP_051968620.1 hypothetical protein -
  LVJ80_RS12315 (LVJ80_12425) - 2387698..2388408 (-) 711 WP_051968621.1 hypothetical protein -
  LVJ80_RS12320 (LVJ80_12420) - 2388493..2388660 (+) 168 WP_169815863.1 hypothetical protein -
  LVJ80_RS12325 (LVJ80_12415) - 2388820..2389407 (+) 588 WP_051968622.1 KilA-N domain-containing protein -
  LVJ80_RS12330 (LVJ80_12410) - 2389461..2390189 (-) 729 WP_034295320.1 phage replication initiation protein, NGO0469 family -
  LVJ80_RS12335 (LVJ80_12405) - 2390276..2390557 (-) 282 WP_034295318.1 hypothetical protein -
  LVJ80_RS12340 (LVJ80_12400) - 2390584..2390736 (-) 153 WP_156961073.1 hypothetical protein -
  LVJ80_RS12345 (LVJ80_12395) - 2390729..2390980 (-) 252 WP_034295316.1 hypothetical protein -
  LVJ80_RS12350 (LVJ80_12390) - 2391039..2391344 (-) 306 WP_034295314.1 hypothetical protein -
  LVJ80_RS12355 (LVJ80_12385) - 2391542..2391913 (-) 372 WP_034295312.1 ASCH domain-containing protein -
  LVJ80_RS12360 (LVJ80_12380) - 2391885..2392937 (-) 1053 WP_034295310.1 hypothetical protein -
  LVJ80_RS12365 (LVJ80_12375) - 2392969..2393283 (-) 315 WP_034295308.1 DNA-binding transcriptional regulator -
  LVJ80_RS12370 (LVJ80_12370) - 2393280..2393648 (-) 369 WP_034295306.1 type II toxin-antitoxin system RelE/ParE family toxin -
  LVJ80_RS12375 (LVJ80_12365) - 2393652..2394227 (-) 576 WP_034295304.1 LexA family transcriptional regulator -
  LVJ80_RS12380 (LVJ80_12360) - 2394343..2394576 (+) 234 WP_034295302.1 Cro/CI family transcriptional regulator -
  LVJ80_RS12385 (LVJ80_12355) - 2394589..2394795 (-) 207 WP_034295300.1 KTSC domain-containing protein -
  LVJ80_RS12390 (LVJ80_15665) - 2394816..2394938 (+) 123 WP_280517498.1 hypothetical protein -
  LVJ80_RS12395 (LVJ80_12350) - 2394996..2395721 (+) 726 WP_051968619.1 phage antirepressor KilAC domain-containing protein -
  LVJ80_RS12400 (LVJ80_12345) - 2395730..2397322 (+) 1593 WP_169815862.1 DUF1376 domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 54190.09 Da        Isoelectric Point: 7.0729

>NTDB_id=652017 LVJ80_RS12245 WP_034295356.1 2377973..2379469(-) (comM) [Alysiella crassa strain S6]
MTFALVNSRALSGMNAPLVEVEVHLSNGLPQINIVGLPETEVKESRDRVRAAIIQSGFEFPAQKITVNLAPADLPKESAR
FDLPIAIGILAASGQISAEYLAQYEFAGELALSGSLRPIRGALAMAWQGQQANRAFMLPKDNAKHAAVLDSIRVYGADNL
NEVVAHLNGTDLLEAIDGTHVFRQPENIAQPDLRDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPSILPPL
NDEELISVWALRSLLPHHLQDFDVKRPFRSPHHSASSAALVGGGSDPKPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
ENGEIHISRASRQATFPAKFQLLAAMNPCPCGFAGHPTKPCRCTAESVRRYRDKISGPLLDRIDLTIEVPALPAADLLST
QESESSATVLQRVMAARERQYARQGKTNAQLSVTDLDQIAQISPESKQILAEMLEKLSLSARSYHRILRVARTIADLAGD
ETVSRQHLLRAVGFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=652017 LVJ80_RS12245 WP_034295356.1 2377973..2379469(-) (comM) [Alysiella crassa strain S6]
ATGACTTTCGCCCTTGTAAACAGTCGCGCTTTGAGCGGCATGAACGCGCCTTTGGTAGAAGTGGAAGTGCATTTGTCCAA
TGGTCTGCCGCAAATCAATATTGTCGGGCTGCCTGAAACGGAAGTGAAGGAAAGCCGCGACCGCGTTCGTGCCGCGATTA
TTCAGAGTGGTTTTGAGTTTCCCGCGCAAAAAATCACGGTCAATCTTGCCCCTGCGGATTTGCCCAAAGAATCGGCGCGA
TTTGATTTGCCGATTGCGATTGGGATTTTGGCGGCGAGCGGGCAGATTTCGGCGGAATATTTGGCGCAATATGAATTTGC
GGGTGAATTGGCACTTTCAGGCAGCCTGCGCCCGATACGCGGTGCGTTGGCGATGGCGTGGCAGGGGCAACAAGCGAACC
GCGCTTTTATGTTGCCCAAAGACAATGCGAAACACGCCGCCGTGTTGGACAGCATACGCGTGTATGGCGCGGACAATTTG
AATGAAGTGGTGGCGCATTTAAATGGCACAGATTTGCTGGAAGCGATAGACGGCACACACGTTTTCAGGCAGCCTGAAAA
TATTGCGCAACCTGATTTGCGCGATGTGAAAGGGCAACACACCGCCCGTTTGGCGTTGGAAATTGCGGCGGCTGGCGGAC
ACAGTTTGCTGATGATGGGCCCTCCAGGTACGGGCAAATCCATGCTCGCGCAACGCTTGCCGTCTATTTTGCCGCCTTTG
AATGATGAAGAATTGATTTCGGTGTGGGCATTGCGTTCACTCTTGCCCCATCATTTGCAAGATTTTGATGTGAAACGACC
TTTTCGCAGCCCACACCATTCGGCAAGTTCAGCGGCATTGGTGGGTGGTGGTTCCGACCCGAAACCAGGGGAAATTTCAT
TGGCACATCACGGCGTTTTGTTTTTGGACGAGCTGCCTGAATTTGACCGCAAAGTCTTGGAAGTGTTGCGTGAACCTTTG
GAAAATGGCGAAATTCACATTTCACGCGCTTCACGACAAGCCACTTTTCCTGCTAAATTTCAATTGCTTGCAGCGATGAA
TCCGTGTCCATGTGGTTTTGCGGGACACCCGACCAAACCGTGTCGTTGCACGGCGGAAAGTGTGCGCCGTTACCGCGACA
AAATTTCAGGGCCTTTGCTTGACCGCATTGATTTGACAATAGAAGTCCCTGCCCTACCCGCCGCCGATTTGCTTTCCACA
CAAGAAAGCGAAAGCAGCGCAACCGTGTTGCAGCGCGTGATGGCGGCGCGTGAACGCCAATATGCGCGACAAGGCAAAAC
CAACGCGCAATTATCGGTTACAGATTTAGACCAAATTGCCCAAATTTCGCCCGAAAGCAAGCAAATTTTGGCAGAAATGT
TGGAAAAACTGTCTTTATCCGCCCGAAGCTATCATCGCATTTTGCGCGTGGCGCGGACGATTGCGGATTTGGCGGGCGAT
GAAACGGTGTCGCGGCAACATTTATTGCGGGCGGTGGGATTTCGGCGGGCATTATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A376BWB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.61

100

0.526
  comM Haemophilus influenzae Rd KW20

50.699

100

0.51
  comM Vibrio campbellii strain DS40M4

50.1

100

0.504
  comM Glaesserella parasuis strain SC1401

50.2

100

0.504
  comM Legionella pneumophila str. Paris

48.119

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.119

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.2

100

0.444