NTDB

Overview

Name	dprA	Type	Machinery gene
Locus tag	LVJ79_RS00455	Genome accession	NZ_CP091518
Coordinates	72607..73794 (-)	Length	395 a.a.
NCBI ID	WP_032827817.1	Uniprot ID	-
Organism	Kingella kingae strain 4177/66
Function	ssDNA binding; loading RecA onto ssDNA (predicted from homology) DNA processing

Genomic Context

Location: 67607..78794

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LVJ79_RS00420 (LVJ79_00420)	-	67782..69200 (+)	1419	WP_003788172.1	alanine/glycine:cation symporter family protein	-
LVJ79_RS00430 (LVJ79_00430)	-	69360..70334 (-)	975	WP_003788170.1	polyprenyl synthetase family protein	-
LVJ79_RS00435 (LVJ79_00435)	rpmA	70453..70725 (-)	273	WP_003788168.1	50S ribosomal protein L27	-
LVJ79_RS00440 (LVJ79_00440)	rplU	70751..71056 (-)	306	WP_003792048.1	50S ribosomal protein L21	-
LVJ79_RS00445 (LVJ79_00445)	-	71159..72046 (-)	888	WP_003788164.1	polyprenyl synthetase family protein	-
LVJ79_RS00450 (LVJ79_00450)	xseB	72039..72266 (-)	228	WP_003788162.1	exodeoxyribonuclease VII small subunit	-
LVJ79_RS00455 (LVJ79_00455)	dprA	72607..73794 (-)	1188	WP_032827817.1	DNA-processing protein DprA	Machinery gene
LVJ79_RS00460 (LVJ79_00460)	tsaA	73940..74626 (-)	687	WP_032133005.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
LVJ79_RS00465 (LVJ79_00465)	-	74706..75263 (-)	558	WP_003788155.1	porin family protein	-
LVJ79_RS00470 (LVJ79_00470)	mnmE	75374..76753 (+)	1380	WP_003788153.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-
LVJ79_RS00475 (LVJ79_00475)	gap	77102..78106 (-)	1005	WP_003788149.1	type I glyceraldehyde-3-phosphate dehydrogenase	-

Sequence

Protein

Download Length: 395 a.a. Molecular weight: 42417.77 Da Isoelectric Point: 5.3009

                                >NTDB_id=651971 LVJ79_RS00455 WP_032827817.1 72607..73794(-) (dprA) [Kingella kingae strain 4177/66]

MVTESERCAWIELALTPYIGAESFLRLIEHCGSAAEALRAPVNLVAQLAHHGKQAAAAWTDKSKAKSACEAALQWEQQEN

CRLLLLCDDDYPQLLTEGLTPPPLLFVRGQMACLQRPAIGIVGGRRATPQAVRMAGDFGKALSEKGIAVISGMATGIDAA

AHEGALQGSSSTIAVWGTGIDRIYPQSNQKLAYQIAERGAIISEFPLGTRPVAGNFPRRNRIIAALSWATLVVEATVESG

SLITARLAAEMGREVMAIPSSIDNMLAKGCHKLIKEGAKLVECVDDIVQECPLLLGESVQAALDLPTTLSTRKKREKTAK

PIAQISEVNEPETPSSLHENSDNVLLNAMGFSPIHPDLLAENLNLPAVDVYAELTELELDGWIVSMAGGRFQRVK

Nucleotide

Download Length: 1188 bp

                                >NTDB_id=651971 LVJ79_RS00455 WP_032827817.1 72607..73794(-) (dprA) [Kingella kingae strain 4177/66]

ATGGTTACAGAATCAGAACGCTGTGCATGGATAGAATTGGCTCTAACCCCTTATATTGGCGCGGAAAGTTTTTTGCGCCT

GATTGAGCATTGCGGTTCGGCAGCCGAAGCCTTGCGTGCGCCAGTCAATTTGGTGGCGCAGTTGGCACATCATGGCAAAC

AAGCTGCCGCCGCGTGGACAGACAAAAGTAAGGCAAAAAGTGCGTGTGAAGCGGCTTTGCAATGGGAGCAACAGGAAAAT

TGTAGGCTGCTTTTGTTGTGCGATGACGATTATCCACAGCTCTTAACCGAAGGTTTAACGCCACCTCCATTGCTGTTTGT

GCGTGGACAAATGGCGTGTTTACAGCGCCCTGCAATCGGCATTGTTGGCGGCAGACGCGCCACGCCACAAGCGGTACGAA

TGGCTGGCGATTTTGGTAAAGCATTGAGTGAAAAAGGCATTGCGGTTATTTCGGGCATGGCAACAGGCATTGACGCGGCA

GCACACGAAGGCGCGTTGCAAGGATCGAGCAGCACGATTGCGGTGTGGGGAACGGGCATTGACCGAATTTATCCACAGAG

CAACCAAAAATTAGCATATCAAATTGCCGAACGTGGCGCGATTATTTCCGAATTTCCATTGGGAACGCGCCCTGTTGCAG

GCAATTTTCCGCGCCGAAATCGGATTATTGCGGCGTTGAGTTGGGCGACTTTGGTGGTGGAAGCGACGGTGGAAAGTGGC

TCGCTCATCACAGCGCGATTGGCGGCGGAAATGGGGCGCGAAGTCATGGCGATTCCCAGTTCTATTGACAATATGCTTGC

CAAAGGTTGCCATAAACTCATCAAAGAAGGCGCGAAATTAGTGGAATGCGTGGACGATATTGTGCAGGAATGTCCGCTGT

TGTTGGGCGAATCGGTGCAGGCTGCTTTGGATTTACCCACAACTTTATCCACAAGAAAGAAACGCGAAAAAACAGCGAAA

CCAATCGCCCAAATAAGCGAAGTAAACGAACCCGAAACGCCAAGCAGCCTGCACGAAAACAGCGATAATGTGTTGCTCAA

TGCGATGGGATTTTCGCCTATCCACCCTGATTTATTGGCAGAAAATTTAAATTTGCCTGCTGTGGACGTGTATGCCGAGC

TAACCGAGTTGGAATTGGACGGCTGGATTGTGTCTATGGCTGGCGGACGTTTTCAGCGTGTGAAGTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-282)

DprA winged helix domain (DprA_WH)

(339-389)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
dprA	Neisseria meningitidis strain C311	57.895	100	0.585
dprA	Neisseria meningitidis MC58	57.895	100	0.585
dprA	Neisseria gonorrhoeae MS11	56.359	100	0.572
dprA	Neisseria gonorrhoeae strain FA1090	55.86	100	0.567
dprA	Vibrio campbellii strain DS40M4	36.896	99.494	0.367
dprA	Vibrio cholerae strain A1552	36.181	100	0.365

Detailed information NTG0651971