Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ81_RS10795 Genome accession   NZ_CP091512
Coordinates   2217973..2219487 (-) Length   504 a.a.
NCBI ID   WP_019958294.1    Uniprot ID   -
Organism   Vitreoscilla stercoraria strain SAG 1488-6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2212973..2224487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ81_RS10775 (LVJ81_10775) - 2214180..2215340 (-) 1161 WP_019958298.1 ATP phosphoribosyltransferase regulatory subunit -
  LVJ81_RS10780 (LVJ81_10780) - 2215471..2216283 (-) 813 WP_019958297.1 undecaprenyl-diphosphate phosphatase -
  LVJ81_RS10785 (LVJ81_10785) - 2216366..2217049 (-) 684 WP_019958296.1 thiol:disulfide interchange protein DsbA/DsbL -
  LVJ81_RS10790 (LVJ81_10790) - 2217090..2217908 (-) 819 WP_081619558.1 SPOR domain-containing protein -
  LVJ81_RS10795 (LVJ81_10795) comM 2217973..2219487 (-) 1515 WP_019958294.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ81_RS10800 (LVJ81_10800) - 2219500..2219820 (-) 321 WP_019958293.1 accessory factor UbiK family protein -
  LVJ81_RS10805 (LVJ81_10805) - 2219887..2220318 (-) 432 WP_019958292.1 hypothetical protein -
  LVJ81_RS10810 (LVJ81_10810) - 2220315..2221076 (-) 762 WP_019958291.1 NUDIX domain-containing protein -
  LVJ81_RS10815 (LVJ81_10815) acpS 2221073..2221450 (-) 378 WP_026353545.1 holo-ACP synthase -
  LVJ81_RS10820 (LVJ81_10820) pdxJ 2221459..2222202 (-) 744 WP_019958289.1 pyridoxine 5'-phosphate synthase -
  LVJ81_RS10825 (LVJ81_10825) recO 2222211..2222978 (-) 768 WP_040755743.1 DNA repair protein RecO -
  LVJ81_RS10830 (LVJ81_10830) - 2223158..2223700 (-) 543 WP_019958287.1 hypothetical protein -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54345.88 Da        Isoelectric Point: 8.7229

>NTDB_id=651917 LVJ81_RS10795 WP_019958294.1 2217973..2219487(-) (comM) [Vitreoscilla stercoraria strain SAG 1488-6]
MSLAMVYSRALTGMNAPLVEVEAHLANGLPAFNLVGLPDTEVKESRERVRAAIVQSGFEFPTKKITVNLAPADLPKDSGR
FDLPIAIAILLASGQIKPQQTDILQFEFAGELALSGRLRPIRGALAMAVACASHQRAFVLPSVSAEQAALLPDATVYAAE
SLSQVAAQLNGLQPWQIAQYDGVAQTPEALLDLVDVKGQHSARFALEVAAAGGHHLLMLGPPGTGKSMLAQRLPSILPPL
NTQERLSLASIRSLLMQKTADVLPAHRPFIAPHHSASLASLVGGGSDPKPGAVSLAHHGILFLDELPEFDRKVLESLREP
LEQGEIHISRAKSHVVFPAQFQLVAAMNPCPCGFSGHPSKPCRCSVESIQRYRGKISGPLLDRMDIIIEVPALGHDDLIL
KSIPESSAAVKMRVHDAYILQQQRQGKSNAALGVAQLQSLAKIENDAQAYLSKIINDLGLSVRVFHRLLRLARTCADLQR
NDTVKVQHIIQAIQLRRAGSNRFS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=651917 LVJ81_RS10795 WP_019958294.1 2217973..2219487(-) (comM) [Vitreoscilla stercoraria strain SAG 1488-6]
ATGTCGTTGGCAATGGTGTATTCGAGGGCTTTGACTGGAATGAACGCACCTTTGGTGGAGGTAGAAGCCCACTTAGCCAA
CGGCTTGCCTGCTTTTAATTTGGTTGGCTTGCCAGACACGGAAGTCAAAGAAAGTCGTGAGCGCGTTCGTGCTGCGATTG
TACAATCAGGATTTGAATTTCCTACCAAAAAAATCACGGTCAATTTGGCACCTGCTGATTTGCCCAAAGATTCAGGTCGC
TTTGATTTGCCGATTGCGATTGCCATTTTGTTGGCATCAGGTCAAATCAAACCACAACAAACAGACATTTTACAATTTGA
ATTTGCTGGAGAATTGGCGCTTTCAGGACGCTTGCGACCGATTCGAGGCGCTTTGGCGATGGCTGTGGCTTGTGCTAGCC
ACCAACGAGCATTTGTTTTGCCTAGTGTGAGTGCAGAGCAAGCGGCATTGTTGCCTGATGCGACGGTGTATGCTGCCGAA
AGCTTGAGCCAAGTGGCAGCGCAATTGAATGGTTTGCAGCCGTGGCAAATAGCGCAATATGATGGTGTGGCGCAAACGCC
CGAAGCATTGTTGGATTTGGTCGATGTTAAGGGTCAGCACAGCGCACGTTTTGCATTGGAAGTGGCTGCGGCTGGTGGGC
ATCATTTATTGATGTTAGGGCCGCCAGGCACAGGGAAATCCATGTTGGCGCAGCGTTTGCCCAGTATTTTACCCCCTTTG
AATACGCAAGAGCGTTTGAGTTTGGCCAGTATTCGTTCTTTATTGATGCAGAAAACAGCCGATGTTTTGCCTGCGCATCG
TCCTTTTATTGCACCACATCACTCTGCTTCATTGGCTTCATTGGTCGGTGGTGGCTCAGACCCTAAGCCTGGCGCGGTTT
CTTTGGCGCATCACGGCATTTTGTTTTTGGATGAGTTGCCAGAGTTTGACCGAAAAGTATTGGAATCTTTGCGTGAGCCA
TTAGAGCAAGGTGAAATTCACATTTCTAGAGCCAAAAGCCATGTGGTATTTCCTGCACAATTTCAATTGGTCGCAGCGAT
GAATCCTTGTCCTTGTGGTTTTTCAGGACACCCCAGTAAGCCATGCCGTTGTTCTGTGGAAAGCATACAACGCTATCGAG
GGAAAATTTCAGGACCTTTGTTAGATCGCATGGATATTATTATTGAAGTACCTGCTTTGGGGCATGATGATTTGATATTG
AAAAGCATACCTGAAAGCAGTGCGGCTGTTAAAATGCGTGTACATGACGCTTACATTTTACAACAGCAGCGACAAGGTAA
GAGCAATGCGGCTTTAGGGGTTGCGCAATTGCAAAGCTTGGCAAAAATTGAAAATGATGCGCAAGCTTATTTGTCAAAAA
TAATCAATGATTTGGGCTTGTCTGTGCGTGTGTTTCATCGTTTGTTAAGATTGGCCCGTACCTGCGCAGACTTGCAAAGA
AATGATACAGTTAAGGTTCAGCATATCATTCAGGCAATACAGTTGCGAAGGGCGGGGTCAAATCGCTTTAGTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

49.296

98.611

0.486
  comM Vibrio campbellii strain DS40M4

48.996

98.81

0.484
  comM Haemophilus influenzae Rd KW20

47.809

99.603

0.476
  comM Glaesserella parasuis strain SC1401

45.908

99.405

0.456
  comM Legionella pneumophila str. Paris

43.615

100

0.44
  comM Legionella pneumophila strain ERS1305867

43.615

100

0.44
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.574

100

0.427