Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ82_RS06385 Genome accession   NZ_CP091511
Coordinates   1215096..1216622 (-) Length   508 a.a.
NCBI ID   WP_058304925.1    Uniprot ID   -
Organism   Vitreoscilla massiliensis strain SN4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1210096..1221622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ82_RS06365 (LVJ82_06365) - 1211372..1212532 (-) 1161 WP_058304921.1 ATP phosphoribosyltransferase regulatory subunit -
  LVJ82_RS06370 (LVJ82_06370) - 1212662..1213471 (-) 810 WP_058304922.1 undecaprenyl-diphosphate phosphatase -
  LVJ82_RS06375 (LVJ82_06375) - 1213543..1214229 (-) 687 WP_058304923.1 thiol:disulfide interchange protein DsbA/DsbL -
  LVJ82_RS06380 (LVJ82_06380) - 1214251..1215060 (-) 810 WP_058304924.1 SPOR domain-containing protein -
  LVJ82_RS06385 (LVJ82_06385) comM 1215096..1216622 (-) 1527 WP_058304925.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ82_RS06390 (LVJ82_06390) - 1216642..1216968 (-) 327 WP_058304926.1 accessory factor UbiK family protein -
  LVJ82_RS06395 (LVJ82_06395) - 1217034..1217465 (-) 432 WP_058304927.1 hypothetical protein -
  LVJ82_RS06400 (LVJ82_06400) - 1217462..1218226 (-) 765 WP_058304928.1 NUDIX domain-containing protein -
  LVJ82_RS06405 (LVJ82_06405) acpS 1218223..1218600 (-) 378 WP_058304929.1 holo-ACP synthase -
  LVJ82_RS06410 (LVJ82_06410) pdxJ 1218606..1219352 (-) 747 WP_058304930.1 pyridoxine 5'-phosphate synthase -
  LVJ82_RS06415 (LVJ82_06415) recO 1219361..1220128 (-) 768 WP_234332982.1 DNA repair protein RecO -
  LVJ82_RS06420 (LVJ82_06420) - 1220465..1220614 (-) 150 WP_244796837.1 hypothetical protein -
  LVJ82_RS06425 (LVJ82_06425) - 1220650..1221228 (+) 579 WP_058304931.1 flavin reductase family protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 54609.54 Da        Isoelectric Point: 6.8921

>NTDB_id=651884 LVJ82_RS06385 WP_058304925.1 1215096..1216622(-) (comM) [Vitreoscilla massiliensis strain SN4]
MSLATVCSRALSGMDAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAILQSGFDFPAKKITVNLAPADLPKDSGR
FDLPIAIGILVASGQVMADDVAQYEFAGELALSGRLRGIRGALAMAVSCAHSGRAFVLPSDSAAQAALLQHTDIYAAASL
AEVAAHLNRVTPLSVVQVTEPVLDLSAMADLSEVKGQYSARRALEVTAAGGHNLLMLGPPGTGKSMLAQRLPSILPPLSL
DERLSVASIRSLLMQGSAEVLPQARPFQMPHHSASAVALVGGGSDPRPGAISLAHCGVLFLDELPEFDRKVLEALREPLE
SGEIHISRASRNAVFPARFQLVAAMNPCPCGYFGHASRPCRCSMETIQRYRDKISGPLLDRIDLIIEVPQLSEQDLTSTK
RPESSAQVRERVLQAHETQWQRQGKSNAALNVDELDSVAAIGADAAQYLSKLMNDLNLSARSYHRLLRVARTCADLHSDA
VVQPSHIVEAIQFRRAWSNQLQLGHKSW

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=651884 LVJ82_RS06385 WP_058304925.1 1215096..1216622(-) (comM) [Vitreoscilla massiliensis strain SN4]
ATGTCATTGGCCACGGTGTGTTCCCGCGCTTTGAGCGGTATGGACGCACCTTTGGTGGAGGTAGAAGCCCACTTGGCCAA
TGGTTTGCCCGCATTTAACATCGTTGGTTTGCCCGATACCGAGGTGAAAGAAAGCCGCGATCGGGTCAGGGCAGCCATCT
TGCAGTCGGGTTTCGATTTCCCCGCCAAAAAAATCACCGTGAATTTGGCACCTGCCGATTTGCCCAAGGATTCAGGCCGC
TTTGATTTGCCGATAGCAATCGGCATCTTGGTCGCATCGGGGCAAGTCATGGCCGATGATGTGGCGCAATACGAATTTGC
TGGCGAATTGGCACTTTCAGGCCGCTTGCGTGGCATACGCGGTGCGCTGGCAATGGCAGTATCGTGTGCCCATTCGGGAC
GGGCGTTTGTGTTGCCCAGTGACAGTGCGGCGCAAGCAGCCTTGTTGCAGCACACAGATATTTACGCAGCCGCCAGTTTG
GCTGAAGTTGCGGCGCATTTGAATCGCGTCACGCCATTGAGTGTGGTGCAGGTGACTGAGCCCGTGCTGGATTTGAGTGC
GATGGCTGATTTGAGCGAGGTCAAAGGCCAGTACAGCGCGCGCCGTGCCTTGGAAGTGACTGCCGCTGGTGGCCACAATT
TGTTGATGTTGGGGCCGCCCGGTACTGGTAAATCGATGTTGGCACAACGCTTGCCCAGTATTTTACCGCCGCTGTCGTTG
GACGAACGCTTGAGCGTGGCCAGCATTCGCTCATTGCTGATGCAAGGCAGTGCCGAAGTGTTGCCACAAGCGCGGCCGTT
TCAAATGCCGCACCATTCGGCTTCGGCGGTGGCTTTGGTCGGCGGCGGTTCAGACCCACGACCGGGGGCAATTTCGCTGG
CGCATTGTGGCGTGTTGTTTTTGGATGAGCTGCCTGAGTTTGACCGCAAGGTATTGGAAGCGCTGCGCGAGCCTTTGGAA
AGTGGTGAAATTCACATTTCCAGGGCCAGTCGCAATGCGGTGTTTCCGGCGCGGTTTCAGTTGGTGGCGGCGATGAATCC
ATGCCCGTGTGGCTATTTTGGCCATGCCAGTCGGCCTTGTCGTTGCTCTATGGAAACGATACAGCGTTACCGCGATAAGA
TTTCCGGCCCGTTGCTCGATCGCATTGATTTGATTATTGAAGTGCCGCAATTGAGTGAGCAGGATTTGACCAGTACCAAG
CGGCCTGAAAGCAGTGCCCAAGTGCGTGAACGGGTGTTGCAAGCGCATGAGACGCAATGGCAGCGTCAAGGCAAAAGCAA
TGCGGCTTTGAATGTGGATGAATTGGACAGCGTCGCGGCCATCGGTGCCGATGCGGCGCAGTATTTGTCCAAATTGATGA
ATGATTTAAACTTGTCAGCCCGCAGTTACCACAGATTGCTGCGAGTGGCACGAACCTGTGCAGATTTGCACAGCGATGCC
GTGGTTCAACCCAGCCACATTGTTGAGGCCATACAGTTCCGACGGGCTTGGAGCAATCAGCTTCAGTTGGGGCACAAATC
TTGGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-141)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.717

97.441

0.504
  comM Haemophilus influenzae Rd KW20

51.102

98.228

0.502
  comM Vibrio campbellii strain DS40M4

51.008

97.638

0.498
  comM Glaesserella parasuis strain SC1401

48.497

98.228

0.476
  comM Legionella pneumophila str. Paris

47.012

98.819

0.465
  comM Legionella pneumophila strain ERS1305867

47.012

98.819

0.465
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.732

99.016

0.443