Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ86_RS06445 Genome accession   NZ_CP091510
Coordinates   1407013..1408509 (-) Length   498 a.a.
NCBI ID   WP_047760238.1    Uniprot ID   A0A0J0YUE6
Organism   Neisseria arctica strain KH1503     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1402013..1413509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ86_RS11060 - 1402985..1403116 (+) 132 WP_268776888.1 hypothetical protein -
  LVJ86_RS06425 (LVJ86_06425) - 1403143..1403997 (+) 855 WP_235284579.1 nuclease-related domain-containing protein -
  LVJ86_RS06430 (LVJ86_06430) - 1404144..1404965 (-) 822 WP_047760236.1 undecaprenyl-diphosphate phosphatase -
  LVJ86_RS06435 (LVJ86_06435) - 1405252..1405959 (-) 708 WP_047760237.1 thiol:disulfide interchange protein DsbA/DsbL -
  LVJ86_RS06440 (LVJ86_06440) - 1406144..1406914 (-) 771 WP_047760275.1 SPOR domain-containing protein -
  LVJ86_RS06445 (LVJ86_06445) comM 1407013..1408509 (-) 1497 WP_047760238.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ86_RS06450 (LVJ86_06450) - 1408528..1408830 (-) 303 WP_047760239.1 accessory factor UbiK family protein -
  LVJ86_RS06455 (LVJ86_06455) - 1408930..1409364 (-) 435 WP_047760240.1 hypothetical protein -
  LVJ86_RS06460 (LVJ86_06460) - 1409373..1410176 (-) 804 WP_047760241.1 NUDIX domain-containing protein -
  LVJ86_RS06465 (LVJ86_06465) acpS 1410212..1410589 (-) 378 WP_047760242.1 holo-ACP synthase -
  LVJ86_RS06470 (LVJ86_06470) pdxJ 1410686..1411417 (-) 732 WP_047760243.1 pyridoxine 5'-phosphate synthase -
  LVJ86_RS06475 (LVJ86_06475) recO 1411496..1412248 (-) 753 WP_047760276.1 DNA repair protein RecO -
  LVJ86_RS06480 (LVJ86_06480) yaaA 1412410..1413189 (+) 780 WP_047760244.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53547.72 Da        Isoelectric Point: 7.5089

>NTDB_id=651869 LVJ86_RS06445 WP_047760238.1 1407013..1408509(-) (comM) [Neisseria arctica strain KH1503]
MSLAVIYSRALSGMQAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAILQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQIVADRLDKYEFAGELALSGVLRPVRGALAMAWQGMQAGRAFVLPQENATQAAVMREITVFGAGSL
AEVAAHLNGIAPLQQNVPVIKEMPSEALALPDLQDVKGQYTARLALEIAAAGGHSLLMVGPPGTGKSMLAQRLPGILPPL
TEEELISVWALRSLLPQYNQDLSRNRPFRSPHHTSSAPALVGGGSDPRPGEISLAHNGVLFLDELPEFDRKVLEVLREPL
ESGEIHISRAARQAVYPANFQLVAAMNPCPCGYLGHPAKPCRCTPDSIARYRGKISGPLLDRIDLTIEVPALSAAELSGH
EAGESSTVVLARVEKARCRQYERQGKINARLSVTELDSIAAVNEEAKKTLGELLEKLSLSARSYHRILRVARTLADLAGD
EQVLRSHVLRAVSFRRAL

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=651869 LVJ86_RS06445 WP_047760238.1 1407013..1408509(-) (comM) [Neisseria arctica strain KH1503]
ATGTCTTTAGCCGTAATCTACAGCCGCGCTCTTAGCGGAATGCAGGCACCGTTGGTAGAAGTGGAAGCACACTTAGCCAA
CGGGTTGCCTGCATTTAATATTGTCGGCCTACCGGATACCGAAGTAAAGGAAAGCCGTGACCGCGTGCGTGCTGCTATCT
TACAAAGCGGCTTTGATTTTCCCGCCAAAAAAATTACCGTCAATTTAGCTCCCGCGGATTTGCCTAAAGAATCGGGGCGT
TTCGATTTGCCGATTGCATTGGGTATTTTGGCTGCTTCGGGGCAGATTGTGGCAGACCGATTGGACAAATATGAATTTGC
CGGTGAATTGGCCTTGTCGGGTGTTTTACGCCCTGTGCGCGGTGCATTGGCCATGGCTTGGCAGGGTATGCAGGCTGGGC
GTGCATTCGTATTGCCGCAGGAAAATGCTACCCAAGCCGCGGTTATGAGGGAAATAACGGTATTCGGAGCCGGCAGTTTG
GCAGAAGTGGCGGCTCATTTGAACGGAATAGCACCTTTGCAGCAAAATGTGCCGGTAATAAAGGAGATGCCGTCTGAAGC
TTTGGCATTACCTGATTTACAAGACGTAAAAGGCCAATACACTGCCCGTTTGGCCTTGGAAATTGCTGCGGCCGGTGGGC
ATAGTTTATTGATGGTAGGGCCGCCGGGAACCGGTAAATCTATGCTGGCCCAGCGCTTACCGGGTATTTTACCCCCGTTG
ACGGAAGAAGAACTGATTTCCGTATGGGCATTACGTTCTCTGTTACCGCAATATAATCAAGACCTAAGCCGCAACCGCCC
GTTTAGATCGCCACACCATACATCTAGCGCCCCGGCTTTGGTTGGCGGTGGCTCTGATCCCCGCCCGGGTGAGATTTCTT
TGGCACATAACGGCGTGTTGTTTTTAGATGAACTGCCTGAGTTTGACCGTAAAGTTTTAGAAGTTTTACGCGAACCGCTA
GAAAGCGGAGAAATCCATATTTCCCGCGCTGCCCGTCAGGCTGTGTATCCGGCCAATTTCCAATTGGTGGCAGCTATGAA
TCCTTGCCCTTGCGGCTATCTCGGTCACCCGGCCAAACCTTGCCGTTGTACCCCCGACAGTATTGCACGTTACCGAGGTA
AAATTTCCGGGCCGCTGCTTGACCGTATTGATTTAACTATTGAAGTGCCAGCTTTATCTGCTGCCGAATTAAGTGGTCAT
GAAGCCGGGGAATCCAGCACAGTGGTGCTGGCTAGAGTAGAGAAAGCTCGTTGCAGACAGTATGAGCGTCAGGGGAAAAT
TAATGCCCGCTTGAGTGTTACGGAATTGGATAGTATTGCGGCAGTCAATGAAGAGGCTAAAAAAACATTGGGTGAACTGT
TGGAAAAATTATCACTTTCTGCCCGAAGTTATCATCGTATCCTGAGGGTGGCACGAACCTTGGCCGATTTAGCCGGTGAT
GAACAAGTATTGCGTTCGCATGTGTTACGGGCAGTAAGTTTCCGTAGAGCTTTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-396)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0YUE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.108

100

0.542
  comM Vibrio campbellii strain DS40M4

53.614

100

0.536
  comM Haemophilus influenzae Rd KW20

50.497

100

0.51
  comM Glaesserella parasuis strain SC1401

48.907

100

0.494
  comM Legionella pneumophila str. Paris

48.31

100

0.488
  comM Legionella pneumophila strain ERS1305867

48.31

100

0.488
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.129

100

0.456