Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LVJ88_RS01905 Genome accession   NZ_CP091509
Coordinates   415957..417447 (-) Length   496 a.a.
NCBI ID   WP_085418797.1    Uniprot ID   -
Organism   Neisseria dumasiana strain LMG 30012     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 410957..422447
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ88_RS01875 (LVJ88_01875) rplQ 411418..411792 (+) 375 WP_054599898.1 50S ribosomal protein L17 -
  LVJ88_RS01880 (LVJ88_01880) - 412167..412765 (+) 599 Protein_365 transposase -
  LVJ88_RS01885 (LVJ88_01885) - 412879..413237 (+) 359 Protein_366 transposase -
  LVJ88_RS01890 (LVJ88_01890) - 413380..414207 (-) 828 WP_085359933.1 undecaprenyl-diphosphate phosphatase -
  LVJ88_RS01895 (LVJ88_01895) - 414280..414993 (-) 714 WP_085359935.1 thiol:disulfide interchange protein DsbA/DsbL -
  LVJ88_RS01900 (LVJ88_01900) - 415010..415843 (-) 834 WP_085418796.1 SPOR domain-containing protein -
  LVJ88_RS01905 (LVJ88_01905) comM 415957..417447 (-) 1491 WP_085418797.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LVJ88_RS01910 (LVJ88_01910) - 417463..417744 (-) 282 WP_054599906.1 accessory factor UbiK family protein -
  LVJ88_RS01915 (LVJ88_01915) - 417860..419272 (-) 1413 WP_280518130.1 amino acid permease -
  LVJ88_RS01920 (LVJ88_01920) - 419619..420848 (-) 1230 WP_332888971.1 M23 family metallopeptidase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 53765.81 Da        Isoelectric Point: 7.8396

>NTDB_id=651810 LVJ88_RS01905 WP_085418797.1 415957..417447(-) (comM) [Neisseria dumasiana strain LMG 30012]
MSLALVYSRALNGMNAPLVEVEAHLANGLPAFNIVGLPDTEVKESRDRVRAAIIQSGFDFPAKKITVNLAPADLPKESGR
FDLPIALGILAASGQISAEQLHRYEFAGELALSGTLRPVRGALAMAWQGMQAGRAFVLPSENAKQAAVMKDITVYGADNL
CKVAAHLNAVEPLAQTVYDITNRPSEYHNLPDLKDVKGQHTARLALEIAAAGGHSLLMMGPPGTGKSMLAQRLPGILPPL
TDEELIEVWSLRSLLPNHRQELGYGVPVQAPHHTSSQVAIVGGNSGPGEISLAHRGILFLDELPEFDRKVLEVLREPLEN
GEIHISRASHKAVYPAKFQLVAAMNPCPCGYLGHPVKPCRCTPESIARYRGKISGPLLDRIDLTIEVPALSSAELMQQEP
GESSAEVRQRVQAARERQYQRQGKINAALSVTELDNAAMVSKEAAETLGSLLEKLSLSARSYHRIMRVARTLADLNSNET
VTKQHVLRAVSFRRAL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=651810 LVJ88_RS01905 WP_085418797.1 415957..417447(-) (comM) [Neisseria dumasiana strain LMG 30012]
ATGTCGCTTGCCCTTGTTTACAGCCGTGCACTAAACGGCATGAATGCACCGTTGGTTGAGGTGGAAGCCCACCTTGCCAA
CGGTTTACCCGCTTTTAATATCGTCGGCCTGCCCGACACCGAAGTCAAAGAAAGCCGCGACCGTGTTCGCGCCGCCATCA
TACAAAGCGGATTTGACTTTCCCGCCAAAAAAATCACCGTCAACCTTGCTCCGGCCGATCTACCCAAAGAATCAGGGCGC
TTCGATTTACCCATCGCTCTGGGCATTCTTGCCGCTTCCGGCCAAATTTCCGCCGAACAGCTGCACCGCTACGAATTTGC
GGGAGAATTGGCGCTTTCCGGCACTTTACGCCCCGTGCGCGGTGCTTTAGCAATGGCATGGCAGGGAATGCAGGCCGGAA
GAGCATTTGTGCTGCCGTCTGAAAACGCCAAGCAAGCCGCAGTAATGAAAGACATTACCGTTTACGGTGCCGACAATCTC
TGCAAGGTGGCCGCCCATCTCAACGCTGTTGAGCCGCTTGCCCAAACAGTTTACGATATAACTAACAGGCCGTCTGAATA
TCACAATCTGCCGGACTTGAAAGACGTCAAAGGCCAACATACCGCCCGTTTGGCTTTGGAAATTGCCGCAGCAGGCGGAC
ACAGCCTGTTAATGATGGGGCCGCCCGGCACCGGCAAATCCATGCTGGCACAACGCCTGCCGGGTATTTTGCCGCCGCTA
ACTGACGAAGAATTGATCGAAGTATGGTCGTTGCGCTCTCTCCTGCCCAATCACAGACAGGAATTAGGCTACGGCGTGCC
CGTACAGGCTCCTCATCATACTTCCAGCCAAGTGGCCATAGTAGGCGGAAATTCGGGCCCCGGAGAAATTTCCTTAGCCC
ATCGGGGAATTTTATTTTTAGACGAGCTTCCCGAGTTTGACCGTAAAGTTTTAGAAGTTTTACGGGAGCCTCTTGAGAAT
GGCGAAATCCATATTTCCCGAGCTTCTCATAAAGCAGTGTATCCCGCCAAATTCCAACTGGTTGCCGCAATGAACCCATG
TCCGTGCGGCTATCTCGGCCATCCGGTCAAACCGTGCCGCTGCACGCCGGAAAGTATTGCGCGTTACCGTGGAAAAATCT
CAGGACCTTTGCTGGATCGCATTGATTTAACCATTGAAGTACCGGCACTTTCTTCCGCCGAACTGATGCAGCAGGAACCG
GGCGAAAGCAGTGCAGAAGTTCGACAACGGGTGCAAGCCGCAAGAGAACGCCAATATCAACGGCAAGGCAAGATTAACGC
AGCGTTGAGCGTTACGGAACTGGATAACGCAGCAATGGTCTCTAAGGAGGCCGCGGAAACTTTAGGCAGTTTATTGGAAA
AGCTGTCACTCTCTGCCCGCAGTTACCACCGCATTATGCGGGTAGCGCGAACATTGGCAGACTTAAACAGCAACGAAACC
GTAACCAAACAACATGTGTTACGCGCAGTAAGTTTTCGTCGCGCTTTGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.113

100

0.522
  comM Vibrio campbellii strain DS40M4

50.905

100

0.51
  comM Haemophilus influenzae Rd KW20

50

100

0.506
  comM Glaesserella parasuis strain SC1401

48.317

100

0.492
  comM Legionella pneumophila str. Paris

46.337

100

0.472
  comM Legionella pneumophila strain ERS1305867

46.337

100

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.269

100

0.452