Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   LVJ78_RS02995 Genome accession   NZ_CP091507
Coordinates   683663..685894 (-) Length   743 a.a.
NCBI ID   WP_132954587.1    Uniprot ID   A0AAE9GVX7
Organism   Uruburuella suis strain 1258/02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 678663..690894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS02975 (LVJ78_02975) rpsP 678672..678920 (-) 249 WP_132954583.1 30S ribosomal protein S16 -
  LVJ78_RS02980 (LVJ78_02980) - 678997..681243 (-) 2247 WP_165870935.1 bifunctional acetate--CoA ligase family protein/GNAT family N-acetyltransferase -
  LVJ78_RS02985 (LVJ78_02985) aroB 681979..683064 (-) 1086 WP_132954585.1 3-dehydroquinate synthase -
  LVJ78_RS02990 (LVJ78_02990) - 683068..683601 (-) 534 WP_132954586.1 shikimate kinase -
  LVJ78_RS02995 (LVJ78_02995) pilQ 683663..685894 (-) 2232 WP_132954587.1 type IV pilus secretin PilQ Machinery gene
  LVJ78_RS03000 (LVJ78_03000) pilP 685913..686449 (-) 537 WP_132954588.1 pilus assembly protein PilP Machinery gene
  LVJ78_RS03005 (LVJ78_03005) pilO 686476..687111 (-) 636 WP_132954589.1 type 4a pilus biogenesis protein PilO -
  LVJ78_RS03010 (LVJ78_03010) pilN 687114..687734 (-) 621 WP_132954590.1 PilN domain-containing protein Machinery gene
  LVJ78_RS03015 (LVJ78_03015) pilM 687736..688833 (-) 1098 WP_132954591.1 type IV pilus assembly protein PilM -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 80583.29 Da        Isoelectric Point: 8.8322

>NTDB_id=651738 LVJ78_RS02995 WP_132954587.1 683663..685894(-) (pilQ) [Uruburuella suis strain 1258/02]
MKLKPITIKTLCALSLSLAMPAAFAGNITDINVSSLPDNQKIIKIKFDKDVVSPSGFITTTPARIALDFPGTGIQLAQPV
LEYADPLLGQITAAQNNDRARILLALSKAGQYNTQIKGNEVWVYVSEAAEQTQTIAAAESISSRTLGNEPVAPPAPRARA
EQAVAGANIDFRRGNRNSGIIEFNAPAFTGEPDIKQQSDRLVITLKNYPLPAQAQRSLDVSDFNTPVRNVTLKRIGNNTQ
LTIRNQGSWDVRTQSGNGRYSFEISQKSNMESRGLSAAANQKSFSGRRISLDFQDVDVRTILQILAKESGVNIVASDSVN
GKMTLSLKDVPWDQALDLVMQARNLDMRRQGNIINIAPREELLNQDKATLQAQKEIEELGPLFSQTFQLKYKNVEEFRKI
LRIDEDGSSSSSNRNTLLSSRGSALIDPATNTLIITDNRAVIQKFQKLIEELDVAARQVMVEARIVEADDGFSREIGVKF
GYAGSNGTNSWGSNWSNALTNHNTYQANQRARDAATQANLAAAAQDAASGGYTARVLPTLANFALDPNISLPVSAASSSI
ALVHSLASGALGLEIAAMQEQNKGKVLSNPRVLTQDRKEAVIESGQEIPYEESTSSGATSITFKKAVLGLTVTPNITPDG
QIIMNVKINKDNPIACTASGVPTLCISTKQLQTQAMVEDGGTLIVGGIYEEESSNVVNKVPLLGDIPVVGNLFKSRARKE
RRRELLIFITPRIMDNMGSTLRY

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=651738 LVJ78_RS02995 WP_132954587.1 683663..685894(-) (pilQ) [Uruburuella suis strain 1258/02]
ATGAAACTGAAACCGATCACCATCAAAACGCTTTGCGCATTAAGCCTGAGCCTGGCCATGCCGGCCGCTTTTGCCGGCAA
CATTACCGATATTAATGTGTCTTCGCTGCCGGACAACCAAAAAATCATCAAAATCAAGTTTGATAAAGATGTGGTGTCGC
CCAGCGGCTTTATCACCACCACACCCGCCCGCATTGCGCTCGATTTCCCGGGCACCGGCATCCAATTGGCGCAGCCGGTG
TTGGAATATGCCGACCCGCTGCTGGGGCAGATTACCGCCGCACAAAACAACGACCGCGCCCGCATTTTGCTGGCCTTGAG
CAAAGCCGGCCAATACAACACCCAAATCAAGGGTAATGAAGTGTGGGTATATGTGAGCGAAGCGGCCGAGCAAACGCAAA
CCATCGCAGCAGCCGAGAGCATCAGCAGCCGCACGCTGGGCAACGAGCCTGTTGCACCGCCCGCACCCCGCGCCCGCGCC
GAGCAAGCTGTGGCCGGCGCCAATATTGATTTCCGCCGCGGCAACCGCAATTCAGGCATCATCGAATTCAACGCCCCCGC
CTTTACCGGCGAGCCCGACATCAAGCAGCAAAGCGACCGCTTGGTAATCACCCTGAAAAACTACCCGCTGCCCGCTCAAG
CGCAGCGCAGCTTGGATGTGTCTGATTTCAACACCCCAGTGCGCAATGTCACCCTCAAGCGCATCGGCAACAACACCCAG
CTCACTATCCGCAACCAAGGCAGCTGGGATGTGCGCACCCAATCGGGCAACGGCCGCTACAGCTTTGAAATCAGCCAAAA
GAGCAATATGGAATCTCGCGGCCTCAGCGCGGCTGCCAATCAAAAATCTTTCAGCGGCCGCCGCATTTCTTTGGATTTCC
AAGATGTAGACGTGCGCACCATTTTGCAGATTCTGGCCAAAGAATCAGGCGTGAATATTGTGGCCAGCGACAGCGTAAAC
GGCAAAATGACCCTCAGCCTGAAAGATGTGCCGTGGGATCAAGCGCTGGATTTGGTAATGCAGGCGCGCAATCTCGATAT
GCGCCGCCAAGGCAATATCATCAATATCGCCCCGCGCGAAGAATTGCTGAATCAAGACAAAGCCACCTTGCAGGCGCAAA
AAGAAATCGAAGAGCTGGGGCCGCTTTTCTCGCAAACCTTCCAGCTGAAATACAAAAACGTAGAAGAATTCCGCAAAATT
CTGCGCATTGATGAAGACGGCTCCAGTAGCAGCAGCAACCGCAACACCTTGCTGAGCAGCCGCGGCAGCGCCCTGATCGA
TCCGGCCACCAACACCTTGATCATCACCGACAACCGCGCCGTGATTCAAAAATTCCAAAAGCTGATTGAAGAGCTGGATG
TGGCCGCCCGCCAAGTGATGGTGGAAGCGCGCATTGTTGAAGCCGATGACGGTTTCTCGCGCGAAATCGGCGTGAAATTC
GGCTATGCCGGCTCCAACGGCACCAACAGCTGGGGTTCCAACTGGAGCAATGCCCTGACCAATCATAATACCTATCAGGC
CAATCAACGTGCCCGCGATGCCGCCACCCAAGCCAACCTGGCCGCAGCAGCACAGGATGCGGCCAGCGGCGGCTACACCG
CCCGCGTTTTGCCCACGCTGGCCAACTTTGCGCTCGATCCCAATATCAGCCTGCCGGTGTCGGCTGCTTCTTCCAGCATT
GCGCTGGTGCATTCGCTGGCTTCGGGTGCGCTGGGGTTGGAAATTGCCGCCATGCAGGAGCAAAACAAAGGCAAAGTGCT
TTCCAATCCGCGCGTGTTGACGCAAGACCGCAAAGAAGCGGTGATCGAATCCGGCCAAGAAATTCCGTATGAAGAATCCA
CTTCCAGCGGCGCCACCTCGATTACCTTTAAAAAAGCCGTGCTGGGTTTAACCGTTACCCCCAATATCACGCCCGACGGC
CAAATCATCATGAATGTGAAAATAAATAAAGACAATCCGATAGCCTGTACCGCCAGCGGCGTGCCCACGCTGTGTATCAG
CACCAAGCAGCTGCAAACCCAAGCCATGGTGGAAGACGGCGGCACGCTGATTGTGGGCGGCATTTATGAAGAAGAAAGCA
GCAATGTGGTAAACAAAGTACCGCTGCTGGGCGATATTCCGGTGGTCGGCAACCTGTTTAAATCGCGCGCGCGCAAAGAA
CGCCGCCGCGAATTACTGATTTTCATCACCCCGCGCATTATGGACAATATGGGCAGCACCTTGCGCTACTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-117)

Bacterial type II/III secretion system short domain (Secretin_N)

(385-458)

Bacterial type II and III secretion system protein (Secretin)

(577-735)

Secretin and TonB N terminus short domain (STN)

(311-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria gonorrhoeae strain FA1090

56.366

100

0.572
  pilQ Neisseria meningitidis M1080

53.69

100

0.568
  pilQ Neisseria meningitidis MC58

58.974

78.735

0.464