Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   LVJ78_RS03000 Genome accession   NZ_CP091507
Coordinates   685913..686449 (-) Length   178 a.a.
NCBI ID   WP_132954588.1    Uniprot ID   A0AAE9GUJ5
Organism   Uruburuella suis strain 1258/02     
Function   pseudopilus extrusion and retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 680913..691449
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS02985 (LVJ78_02985) aroB 681979..683064 (-) 1086 WP_132954585.1 3-dehydroquinate synthase -
  LVJ78_RS02990 (LVJ78_02990) - 683068..683601 (-) 534 WP_132954586.1 shikimate kinase -
  LVJ78_RS02995 (LVJ78_02995) pilQ 683663..685894 (-) 2232 WP_132954587.1 type IV pilus secretin PilQ Machinery gene
  LVJ78_RS03000 (LVJ78_03000) pilP 685913..686449 (-) 537 WP_132954588.1 pilus assembly protein PilP Machinery gene
  LVJ78_RS03005 (LVJ78_03005) pilO 686476..687111 (-) 636 WP_132954589.1 type 4a pilus biogenesis protein PilO -
  LVJ78_RS03010 (LVJ78_03010) pilN 687114..687734 (-) 621 WP_132954590.1 PilN domain-containing protein Machinery gene
  LVJ78_RS03015 (LVJ78_03015) pilM 687736..688833 (-) 1098 WP_132954591.1 type IV pilus assembly protein PilM -
  LVJ78_RS03020 (LVJ78_03020) - 688988..691375 (+) 2388 WP_132954592.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 19613.08 Da        Isoelectric Point: 7.3196

>NTDB_id=651739 LVJ78_RS03000 WP_132954588.1 685913..686449(-) (pilP) [Uruburuella suis strain 1258/02]
MKTHILLPCLLLLAACGPQHSDLREWMQQTQQQAKTRIQPFEAPSITPVQSYTPPNFSGLNAFNSKRLNLAQQGVNAPDT
HRPKELLEGFSLENLKYVGTLTAGRTISGFVEADGHVYTVKPGNYIGQNYGRIQSITSDKITLVEVVEDSYGNWIFRNAE
LPLNNAADNGAQAGQNSK

Nucleotide


Download         Length: 537 bp        

>NTDB_id=651739 LVJ78_RS03000 WP_132954588.1 685913..686449(-) (pilP) [Uruburuella suis strain 1258/02]
ATGAAAACTCATATCTTACTCCCGTGTTTGTTGCTTTTAGCCGCTTGCGGCCCGCAACACAGCGATTTGCGCGAATGGAT
GCAGCAAACACAGCAACAAGCCAAAACCCGTATCCAGCCTTTTGAAGCCCCCAGCATCACGCCGGTTCAAAGCTACACTC
CGCCCAATTTCAGCGGTTTGAATGCTTTCAACAGCAAGCGCCTCAATCTCGCCCAGCAAGGCGTGAATGCGCCCGACACC
CACCGGCCCAAAGAGCTGCTGGAGGGTTTCAGCTTGGAAAACCTGAAATACGTCGGCACCTTAACGGCAGGCCGCACCAT
TTCCGGTTTTGTAGAAGCCGACGGCCATGTCTACACCGTCAAACCCGGCAACTACATCGGCCAAAACTATGGCCGCATCC
AATCCATCACTTCAGATAAAATCACCTTGGTGGAAGTGGTGGAAGACAGCTACGGCAACTGGATTTTCCGCAATGCCGAA
TTACCGCTGAACAATGCAGCGGACAACGGCGCACAAGCCGGCCAAAACAGCAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(22-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Neisseria meningitidis MC58

53.488

96.629

0.517