Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   LVJ78_RS03010 Genome accession   NZ_CP091507
Coordinates   687114..687734 (-) Length   206 a.a.
NCBI ID   WP_132954590.1    Uniprot ID   A0AAE9H1U0
Organism   Uruburuella suis strain 1258/02     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 682114..692734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LVJ78_RS02990 (LVJ78_02990) - 683068..683601 (-) 534 WP_132954586.1 shikimate kinase -
  LVJ78_RS02995 (LVJ78_02995) pilQ 683663..685894 (-) 2232 WP_132954587.1 type IV pilus secretin PilQ Machinery gene
  LVJ78_RS03000 (LVJ78_03000) pilP 685913..686449 (-) 537 WP_132954588.1 pilus assembly protein PilP Machinery gene
  LVJ78_RS03005 (LVJ78_03005) pilO 686476..687111 (-) 636 WP_132954589.1 type 4a pilus biogenesis protein PilO -
  LVJ78_RS03010 (LVJ78_03010) pilN 687114..687734 (-) 621 WP_132954590.1 PilN domain-containing protein Machinery gene
  LVJ78_RS03015 (LVJ78_03015) pilM 687736..688833 (-) 1098 WP_132954591.1 type IV pilus assembly protein PilM -
  LVJ78_RS03020 (LVJ78_03020) - 688988..691375 (+) 2388 WP_132954592.1 penicillin-binding protein 1A -
  LVJ78_RS03025 (LVJ78_03025) - 691616..692092 (-) 477 WP_244802578.1 IS630 family transposase -
  LVJ78_RS03030 (LVJ78_03030) - 692106..692441 (-) 336 WP_244802577.1 IS630 transposase-related protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 22641.89 Da        Isoelectric Point: 4.7123

>NTDB_id=651740 LVJ78_RS03010 WP_132954590.1 687114..687734(-) (pilN) [Uruburuella suis strain 1258/02]
MIELIKVNLLPYREEIQQKKKQQFKALMLLALAVGAGLSALAYLGINQAIDRQEERNQFLTSEISKLDEQLGEIKKLEQE
KQDFLARKQKVEELQAKRFQAASIIDTLNVLIPEGAYLTAISAESPTTYTISGKATSDNRIAMFMRSIPSTGVFLQPELL
SIKKVDNAQDFTLKVSLNESAPAATDAETVEPTPSGDASAATPEAQ

Nucleotide


Download         Length: 621 bp        

>NTDB_id=651740 LVJ78_RS03010 WP_132954590.1 687114..687734(-) (pilN) [Uruburuella suis strain 1258/02]
ATGATAGAACTGATTAAAGTCAATCTTCTGCCTTACCGCGAGGAAATCCAGCAGAAGAAAAAGCAACAATTCAAGGCGCT
GATGCTGCTTGCATTGGCCGTTGGCGCAGGCTTGTCGGCCTTGGCCTATTTGGGCATCAACCAAGCAATCGACCGCCAGG
AAGAGCGCAACCAATTTCTCACCTCGGAAATCAGCAAACTGGATGAGCAATTGGGCGAAATCAAAAAATTAGAGCAAGAA
AAACAGGATTTTCTGGCGCGCAAACAAAAAGTGGAAGAGCTTCAAGCCAAGCGCTTTCAGGCGGCCTCTATTATCGACAC
GCTGAATGTGCTGATTCCCGAAGGCGCCTACCTAACCGCCATCAGTGCAGAAAGCCCCACCACCTATACCATCAGCGGCA
AAGCCACCAGCGATAACCGGATCGCCATGTTTATGCGCTCCATTCCCAGCACCGGCGTATTCCTGCAACCGGAATTGCTG
AGCATCAAAAAAGTGGATAACGCTCAAGACTTCACCTTGAAAGTCTCATTAAACGAGAGCGCACCGGCCGCAACCGATGC
AGAAACCGTTGAGCCAACCCCCAGCGGGGACGCATCCGCAGCCACACCGGAGGCACAATAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(104-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Neisseria meningitidis strain C311

49.505

98.058

0.485