Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L3V47_RS20575 Genome accession   NZ_CP091480
Coordinates   4482727..4484241 (+) Length   504 a.a.
NCBI ID   WP_277735330.1    Uniprot ID   -
Organism   Aeromonas salmonicida strain ASscau0313     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4477727..4489241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3V47_RS20560 (L3V47_20520) - 4479455..4480396 (-) 942 WP_059111903.1 branched-chain amino acid transaminase -
  L3V47_RS20565 (L3V47_20525) ilvM 4480409..4480699 (-) 291 WP_005318216.1 acetolactate synthase 2 small subunit -
  L3V47_RS20570 (L3V47_20530) ilvG 4480696..4482342 (-) 1647 WP_277735329.1 acetolactate synthase 2 catalytic subunit -
  L3V47_RS20575 (L3V47_20535) comM 4482727..4484241 (+) 1515 WP_277735330.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L3V47_RS20580 (L3V47_20540) - 4484378..4485277 (+) 900 WP_277735331.1 acyltransferase -
  L3V47_RS20585 (L3V47_20545) - 4485436..4485933 (-) 498 WP_277735332.1 DUF523 domain-containing protein -
  L3V47_RS20590 (L3V47_20550) - 4485930..4486580 (-) 651 WP_011898224.1 NUDIX hydrolase -
  L3V47_RS20595 (L3V47_20555) - 4486655..4487290 (+) 636 WP_277735333.1 nicotinamidase -
  L3V47_RS20600 (L3V47_20560) pncB 4487292..4488470 (+) 1179 WP_277735334.1 nicotinate phosphoribosyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54709.62 Da        Isoelectric Point: 7.4493

>NTDB_id=651641 L3V47_RS20575 WP_277735330.1 4482727..4484241(+) (comM) [Aeromonas salmonicida strain ASscau0313]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPEPQTTDSLPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKTERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGRPAI
EKDHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=651641 L3V47_RS20575 WP_277735330.1 4482727..4484241(+) (comM) [Aeromonas salmonicida strain ASscau0313]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGGATAGCGGCGCCGCAAGTCACGGTGGAAGTTCACCTCTCCAA
CGGTCTGCCCGCCTTCAACATGGTGGGATTGCCGGAAACCTCGGTGAAGGAATCCCGGGATCGGGTGCGCAGTGCCCTGC
TAAACGGCAATTTCGAGTTCCCGAGCAAACACATCACGGTCAACCTGGCCCCCGCCGACCTACCCAAGGAGGGAGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
AGGGGAGTTGGCCCTGACCGGCGAGATCCGTCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGCGATGCGGGAC
GCACCCTGCTGGTACCGAGAGAAAATGGCCCCGAAGCCTCCCTCATTCAGGATGCCGAGGTGCGTACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAATATGAGCTGCCCCTGCCGGAGCCCCAGACCACGGACTCTCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAGCGGGCATTGGAGATCGCTGCCGCCGGCAGCCACAACCTGC
TGTTCATAGGCCCGCCCGGTACCGGCAAGAGCATGCTGGCCAGCCGTTTGCCCGGCATCTTGCCACCCCTGAGCGAGCAA
GAGGCGCAGCAAACCGCCGCCATCCACTCCATCGGCGGCCTGACCCCGCGCGCCGGTCACTGGCACCACAGACCCTATCG
CACACCCCATCACAGTGCCTCCGCCGTGGCCCTGGTGGGCGGTGGCAGCCACCCAAGACCGGGGGAGATCTCGTTAGCCC
ACAACGGCGTGCTGTTTCTCGACGAGTTGCCGGAGTTCGAACGCAAGGTGCTGGACTCTCTGCGCGAACCGCTGGAGACG
GGCCACATCACCATCAGCCGCGCCGCCCGTCAGGTGGATTTTCCCGCCCGCTTCCAGCTGGTGGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATATTGCGCTATCTCGGCAAGCTCTCCGGCC
CCTTTCTCGATCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTCACCGGCAAGACGGAGCGGGGG
GAATCGAGCCAGCAGATCCGCGATCGGGTACTGGCGGCGCGGGAGCGGATGCTGAGCCGCAATGGCAAGCTCAACAATCT
CCTTGATAGTCGTGAAATCGAAGATATTTGCCGATTATCGCCGCAAGATGCCGAGTTTTTGGAGAATGCCATCCAGAAAC
TGGGACTCAGCATCCGGGCCTGGCACCGCATACTGCGGGTGTCACGCACCATAGCCGATCTGGCGGGGCGACCTGCGATC
GAGAAGGATCATCTGATCGAGGCTCTCGGCTACAGGGCCATGGACAGGCTGCTGTCGCGGCTGCGCAGCGGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.147

99.603

0.629
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Vibrio campbellii strain DS40M4

62.151

99.603

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.992

100

0.51
  comM Legionella pneumophila strain ERS1305867

50.992

100

0.51
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.169

100

0.466