Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   L3474_RS09515 Genome accession   NZ_CP091450
Coordinates   1860599..1861012 (-) Length   137 a.a.
NCBI ID   WP_000265630.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 3641/15     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 1855599..1866012
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3474_RS09485 (L3474_09420) - 1856301..1857125 (-) 825 WP_000727904.1 membrane protein insertase YidC -
  L3474_RS09490 (L3474_09425) rnpA 1857100..1857471 (-) 372 WP_000739246.1 ribonuclease P protein component -
  L3474_RS09495 - 1857488..1857619 (-) 132 WP_000768904.1 hypothetical protein -
  L3474_RS09500 (L3474_09430) - 1857620..1858810 (-) 1191 WP_000167766.1 acetate kinase -
  L3474_RS09505 (L3474_09435) comYH 1858861..1859814 (-) 954 WP_000345119.1 class I SAM-dependent methyltransferase Machinery gene
  L3474_RS09510 (L3474_09440) - 1859875..1860462 (-) 588 WP_000679774.1 class I SAM-dependent methyltransferase -
  L3474_RS09515 (L3474_09445) comGG/cglG 1860599..1861012 (-) 414 WP_000265630.1 competence type IV pilus minor pilin ComGG Machinery gene
  L3474_RS09520 (L3474_09450) comGF/cglF 1860990..1861451 (-) 462 WP_000250545.1 competence type IV pilus minor pilin ComGF Machinery gene
  L3474_RS09525 (L3474_09455) comGE/cglE 1861414..1861716 (-) 303 WP_000413380.1 competence type IV pilus minor pilin ComGE Machinery gene
  L3474_RS09530 (L3474_09460) comGD/cglD 1861679..1862083 (-) 405 WP_000588005.1 competence type IV pilus minor pilin ComGD Machinery gene
  L3474_RS09535 (L3474_09465) comGC/cglC 1862076..1862402 (-) 327 WP_000738650.1 comG operon protein ComGC Machinery gene
  L3474_RS09540 (L3474_09470) comGB/cglB 1862404..1863420 (-) 1017 WP_013193332.1 competence type IV pilus assembly protein ComGB Machinery gene
  L3474_RS09545 (L3474_09475) comGA/cglA/cilD 1863368..1864309 (-) 942 WP_000249567.1 competence type IV pilus ATPase ComGA Machinery gene
  L3474_RS09550 (L3474_09480) - 1864385..1864750 (-) 366 WP_000286415.1 DUF1033 family protein -
  L3474_RS09555 (L3474_09485) - 1864901..1865959 (-) 1059 WP_000649468.1 zinc-dependent alcohol dehydrogenase family protein -

Sequence


Protein


Download         Length: 137 a.a.        Molecular weight: 15892.29 Da        Isoelectric Point: 10.1695

>NTDB_id=651280 L3474_RS09515 WP_000265630.1 1860599..1861012(-) (comGG/cglG) [Streptococcus pneumoniae strain 3641/15]
MWKKKKVKAGVLLYAVTMAAIFSLLLQFYLNRQVAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTDKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKKSEEKPEKKENS

Nucleotide


Download         Length: 414 bp        

>NTDB_id=651280 L3474_RS09515 WP_000265630.1 1860599..1861012(-) (comGG/cglG) [Streptococcus pneumoniae strain 3641/15]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTATGCAGTCACCATGGCAGCTATCTTTAGTCTTTTGTTGCA
ATTTTACTTGAACCGACAAGTCGCCCACTATCAAGACTATGCTTTGAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTCTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGGATAAGAGTCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACTGATTCAAGCGAAAAAGCGGAGAAGAAAAAATCAGAAGAGAAGCCTGAAAAGA
AAGAGAATTCCTAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus mitis SK321

86.861

100

0.869

  comGG/cglG Streptococcus pneumoniae Rx1

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae D39

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae R6

95.726

85.401

0.818

  comGG/cglG Streptococcus pneumoniae TIGR4

95.726

85.401

0.818

  comGG/cglG Streptococcus mitis NCTC 12261

90.984

89.051

0.81

  comYG Streptococcus mutans UA140

40.299

97.81

0.394

  comYG Streptococcus mutans UA159

40.299

97.81

0.394