Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHA37_RS30350 Genome accession   NZ_CP108006
Coordinates   6685625..6686293 (+) Length   222 a.a.
NCBI ID   WP_266909847.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00335     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6680625..6691293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA37_RS30340 (OHA37_30360) - 6683094..6683798 (-) 705 WP_266909843.1 transglycosylase SLT domain-containing protein -
  OHA37_RS30345 (OHA37_30365) - 6684469..6685632 (+) 1164 WP_266909845.1 GAF domain-containing sensor histidine kinase -
  OHA37_RS30350 (OHA37_30370) vraR 6685625..6686293 (+) 669 WP_266909847.1 response regulator transcription factor Regulator
  OHA37_RS30355 (OHA37_30375) - 6686422..6686667 (+) 246 WP_266913218.1 chaplin -
  OHA37_RS30360 (OHA37_30380) - 6687118..6687903 (-) 786 WP_266909849.1 hypothetical protein -
  OHA37_RS30365 (OHA37_30385) - 6688046..6688840 (+) 795 WP_266909851.1 ABC transporter ATP-binding protein -
  OHA37_RS30370 (OHA37_30390) - 6688903..6689334 (+) 432 WP_266909853.1 NfeD family protein -
  OHA37_RS30375 (OHA37_30395) - 6689465..6690460 (+) 996 WP_266909855.1 SPFH domain-containing protein -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 23749.99 Da        Isoelectric Point: 6.1563

>NTDB_id=651284 OHA37_RS30350 WP_266909847.1 6685625..6686293(+) (vraR) [Streptomyces sp. NBC_00335]
MADASGRSGGGSRIKVLLVDDHQVVRRGLRTFLEVQDDIEVVGEAADGEEGIDRAGELLPDVILMDIKMPGTDGIEALRR
LRTLANPARVLIVTSFTEQRTVVPALRAGAAGYVYKDIDPDALAAAIRSVHAGHVLLQPEVAGALLAEEGPGPSSGRGGN
LTDREREVLHHIADGRSNREIARALVLSEKTVKTHVSNILMKLDVADRTQAALWAVRHGNAQ

Nucleotide


Download         Length: 669 bp        

>NTDB_id=651284 OHA37_RS30350 WP_266909847.1 6685625..6686293(+) (vraR) [Streptomyces sp. NBC_00335]
GTGGCTGACGCGTCGGGCCGTAGCGGCGGCGGCAGCCGCATCAAAGTACTGCTCGTGGACGACCACCAGGTGGTCCGGCG
GGGCCTGCGCACCTTCCTGGAGGTCCAGGACGACATAGAGGTGGTCGGCGAGGCCGCCGACGGCGAGGAGGGCATCGACC
GCGCCGGGGAACTGCTCCCCGACGTCATCCTGATGGACATCAAGATGCCGGGCACCGACGGCATCGAGGCCCTGCGCAGG
CTGCGCACGCTGGCGAACCCCGCGCGCGTGCTGATCGTCACCAGCTTCACCGAGCAGCGCACGGTGGTCCCCGCCCTGCG
CGCGGGCGCGGCGGGTTACGTGTACAAGGACATAGACCCCGACGCCCTCGCCGCCGCCATCCGCTCCGTCCACGCGGGCC
ACGTCCTCCTCCAGCCGGAGGTCGCCGGAGCCCTGCTCGCCGAGGAGGGCCCCGGCCCGTCTTCAGGCCGCGGCGGCAAC
CTGACGGACCGCGAGCGCGAGGTGCTGCACCACATAGCGGACGGGCGCTCGAACCGGGAGATCGCCCGCGCGCTCGTCCT
GTCGGAGAAGACGGTGAAGACGCACGTCTCGAACATCCTGATGAAGCTGGACGTCGCGGACCGTACGCAGGCGGCGCTGT
GGGCGGTCAGACACGGCAACGCGCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(160-215)

Response regulator receiver domain (Response_reg)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

45.455

94.144

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.565

100

0.387