Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   LZ558_RS01855 Genome accession   NZ_CP091424
Coordinates   423904..425412 (-) Length   502 a.a.
NCBI ID   WP_268119147.1    Uniprot ID   -
Organism   Methylobacter sp. YRD-M1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 418904..430412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LZ558_RS01835 (LZ558_01820) - 419052..421010 (+) 1959 WP_268119144.1 CHAT domain-containing protein -
  LZ558_RS01845 (LZ558_01830) rep 421163..423166 (-) 2004 WP_268119145.1 DNA helicase Rep -
  LZ558_RS01850 (LZ558_01835) - 423220..423789 (-) 570 WP_268119146.1 TIGR02281 family clan AA aspartic protease -
  LZ558_RS01855 (LZ558_01840) comM 423904..425412 (-) 1509 WP_268119147.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  LZ558_RS01860 (LZ558_01845) - 425476..425736 (-) 261 WP_194969928.1 accessory factor UbiK family protein -
  LZ558_RS01865 (LZ558_01850) - 425796..426374 (-) 579 WP_268119148.1 MarR family winged helix-turn-helix transcriptional regulator -
  LZ558_RS01870 (LZ558_01855) speE 426383..427234 (-) 852 WP_268119149.1 polyamine aminopropyltransferase -
  LZ558_RS01875 (LZ558_01860) speA 427317..429155 (+) 1839 WP_268119150.1 biosynthetic arginine decarboxylase -
  LZ558_RS01880 (LZ558_01865) - 429196..430113 (+) 918 WP_326498434.1 NAD(P)-dependent oxidoreductase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54016.97 Da        Isoelectric Point: 7.2504

>NTDB_id=651080 LZ558_RS01855 WP_268119147.1 423904..425412(-) (comM) [Methylobacter sp. YRD-M1]
MALAVIYSRGRAGINAPLVTVEVHVANGLPALSIVGLPEAAVKESKDRVRGAILNSRFEFPAQRITINLAPADLPKEGGR
FDLAIALGILAASGQIPTAGLEQYECIGELSLGGELRPISGVLPIAIQARNNGRKLLLPRENIAEAALVKDIEILPAGHL
LEVCAHLSGQSLIQPQFQQPAPDTQTDSIDFADVHGQYHVKRAFEIAAAGSHNLLMLGPPGTGKSMLASRLPTILPLLSE
QQAQESAAIASISDQGLDVANWLKPPYRAPHHTASAAALVGGGSNPRPGEISLAHNGALFLDELPEFDRKVLEVLREPLE
TGHITISRASRQADFPARFQLIAAMNPCPCGYLGDVSGRCHCTSEQVMRYRARVSGPLLDRIDMHLEVPRVPHEVLRKGS
PEGEENSAAIRARVEAARNIAVARSGKANAALTAKEVKQFCPLSEQGHQLLEQAMDKFGLSHRAYHRILKLARTIADLAH
SEQIEIAHLSEAIGYRKLDRSI

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=651080 LZ558_RS01855 WP_268119147.1 423904..425412(-) (comM) [Methylobacter sp. YRD-M1]
ATGGCCTTAGCCGTCATCTACAGCCGGGGCCGCGCCGGCATCAACGCGCCTTTAGTCACGGTCGAAGTACATGTGGCCAA
TGGCCTGCCCGCGCTGTCCATCGTCGGTTTGCCCGAGGCGGCCGTCAAGGAAAGCAAGGACCGCGTGCGTGGCGCTATCC
TGAACTCGCGCTTTGAGTTTCCGGCTCAGCGCATCACGATCAACCTGGCCCCTGCCGATCTGCCCAAGGAAGGCGGCCGT
TTCGACCTGGCCATCGCGCTGGGCATTCTGGCTGCCTCGGGCCAGATTCCAACCGCAGGCCTCGAGCAATACGAATGCAT
AGGCGAGTTGTCTCTGGGCGGCGAGCTGCGTCCGATCAGCGGCGTGCTGCCGATCGCGATACAGGCCCGTAACAACGGCA
GAAAACTGCTGCTGCCGCGCGAGAATATCGCCGAAGCAGCCTTAGTCAAAGACATAGAGATCCTGCCGGCCGGCCATCTG
CTGGAAGTCTGCGCGCACCTGAGCGGACAAAGCCTGATACAGCCACAATTCCAGCAACCCGCACCAGACACGCAGACCGA
CAGCATCGACTTTGCCGATGTGCACGGCCAGTATCATGTCAAACGCGCCTTTGAAATCGCTGCGGCCGGCTCGCACAATC
TATTGATGCTGGGCCCGCCCGGCACCGGCAAGTCGATGCTGGCTTCGCGCCTGCCGACCATTCTGCCGCTGTTATCTGAA
CAACAGGCCCAGGAGAGCGCCGCCATTGCCTCAATCAGCGACCAGGGGCTTGATGTGGCCAACTGGCTGAAGCCGCCCTA
TCGCGCCCCGCACCATACGGCATCGGCAGCGGCGCTGGTCGGCGGCGGTTCCAATCCCCGACCCGGCGAAATCTCGCTGG
CGCATAACGGCGCCCTGTTCCTTGATGAACTGCCCGAATTCGACCGCAAGGTGCTCGAAGTGCTGCGCGAGCCGCTGGAG
ACCGGCCATATCACGATTTCACGCGCCAGCCGGCAGGCCGATTTTCCGGCTCGATTTCAATTGATCGCGGCTATGAACCC
CTGTCCGTGCGGCTATCTGGGCGATGTCTCGGGTCGCTGCCACTGCACCTCGGAGCAGGTCATGCGTTACCGGGCCAGAG
TGTCAGGTCCGCTGCTCGACCGCATCGATATGCATCTGGAAGTGCCGAGGGTTCCGCATGAGGTCCTGCGCAAGGGCTCG
CCGGAGGGCGAAGAAAACAGTGCGGCGATCCGGGCGAGAGTCGAAGCTGCGCGCAATATCGCTGTCGCGCGCAGCGGCAA
GGCCAACGCAGCGCTGACGGCCAAGGAAGTCAAGCAGTTCTGCCCGCTATCCGAGCAGGGCCATCAGCTGCTGGAGCAGG
CCATGGACAAATTCGGCCTGTCGCATCGCGCCTATCATCGCATCCTCAAGCTCGCCCGCACCATTGCCGATCTGGCCCAC
TCGGAACAGATAGAAATTGCGCATTTGAGCGAAGCGATCGGTTATCGCAAACTGGATAGGAGCATTTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.2

99.602

0.57
  comM Vibrio campbellii strain DS40M4

56.487

99.801

0.564
  comM Glaesserella parasuis strain SC1401

53.082

100

0.532
  comM Haemophilus influenzae Rd KW20

51.984

100

0.522
  comM Legionella pneumophila str. Paris

51.4

99.602

0.512
  comM Legionella pneumophila strain ERS1305867

51.4

99.602

0.512
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.979

100

0.48