Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   TBH_RS13190 Genome accession   NZ_AP012273
Coordinates   2772054..2773562 (+) Length   502 a.a.
NCBI ID   WP_041069133.1    Uniprot ID   A0A7U6GKQ1
Organism   Thiolapillus brandeum strain Hiromi     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2767054..2778562
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TBH_RS13155 (TBH_C2551) argH 2767326..2768705 (+) 1380 WP_041071317.1 argininosuccinate lyase -
  TBH_RS13160 (TBH_C2552) - 2768702..2769100 (+) 399 WP_041069117.1 hypothetical protein -
  TBH_RS13165 (TBH_C2553) - 2769151..2770437 (-) 1287 WP_041069119.1 ammonium transporter -
  TBH_RS13170 (TBH_C2554) glnK 2770452..2770790 (-) 339 WP_041069121.1 P-II family nitrogen regulator -
  TBH_RS13175 (TBH_C2555) - 2770810..2771496 (-) 687 WP_041069124.1 TorF family putative porin -
  TBH_RS13185 (TBH_C2556) ubiK 2771762..2772013 (+) 252 WP_041069130.1 ubiquinone biosynthesis accessory factor UbiK -
  TBH_RS13190 (TBH_C2557) comM 2772054..2773562 (+) 1509 WP_041069133.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  TBH_RS13195 (TBH_C2558) tdh 2773623..2774654 (+) 1032 WP_041069136.1 L-threonine 3-dehydrogenase -
  TBH_RS13200 (TBH_C2559) kbl 2774833..2776023 (+) 1191 WP_041069140.1 glycine C-acetyltransferase -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54517.42 Da        Isoelectric Point: 8.0947

>NTDB_id=65089 TBH_RS13190 WP_041069133.1 2772054..2773562(+) (comM) [Thiolapillus brandeum strain Hiromi]
MSLATTYCRASVGIEAPLVTVEVHLANGLPAFTIVGLPEKAVQESRDRVRSALINSGYEFPARRITVNLAPADLPKEGGR
FDLPIAIGILTASGQIPAEALQDCEFFGELNLSGDVRPVTGVLPATLAARQTGHRLFIPRANLEEASLAENIELYPVEHL
LQLSNHLCGQNVISPQRAVLSTTEDRTSIPDLADVRGQAQAKRALIIAAAGNHNLLFSGPPGSGKSMLAARLPGILPPMT
DEQALEHAMIHSISGQPFEPARWKQRQMRAPHHTASAVALVGGGSNPRPGEISLAHHNILFLDEVAEFPRAVLDVLREPL
ETGYINISRASRSARFPARFQLVAAMNPCPCGHLGDPLRACRCTAEQVARYQGRISGPLLDRIDIQVQVPAQPAEAILSP
SGKETSSARVREQVTQAHERQLRRQGCSNAHLQNSALEEHCKLNEASRALLMQAMNKLGLSARAYHRILRVARTIADLEG
MDNLQLPHVTEAIGYRRMDKAR

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=65089 TBH_RS13190 WP_041069133.1 2772054..2773562(+) (comM) [Thiolapillus brandeum strain Hiromi]
ATGTCACTCGCAACTACTTACTGCCGCGCCAGTGTTGGCATCGAAGCCCCCCTTGTTACCGTAGAAGTGCATCTGGCCAA
CGGCCTGCCCGCTTTCACCATCGTGGGTCTGCCGGAAAAGGCGGTGCAGGAAAGCCGCGACCGGGTACGTAGCGCCCTGA
TCAATTCCGGGTACGAATTCCCGGCACGGCGTATCACGGTCAACCTGGCCCCGGCGGATCTGCCCAAAGAAGGTGGGCGC
TTCGATCTGCCCATTGCCATTGGCATCCTCACTGCATCCGGCCAGATCCCTGCCGAAGCCCTGCAGGACTGTGAATTCTT
CGGCGAACTGAACCTGTCCGGAGACGTGCGTCCGGTGACTGGCGTATTACCGGCCACCCTTGCCGCCAGGCAGACTGGGC
ACCGGCTGTTCATTCCCCGCGCCAATCTCGAAGAAGCCAGCCTGGCGGAGAATATCGAACTGTATCCCGTGGAGCACCTG
CTGCAACTGAGCAATCACTTGTGCGGCCAGAACGTCATCTCTCCGCAACGGGCTGTCTTGAGCACCACGGAAGACCGGAC
CAGCATTCCTGATCTGGCGGACGTACGTGGACAGGCCCAGGCCAAACGCGCCCTGATCATTGCCGCCGCCGGAAATCACA
ATCTGTTGTTCAGCGGACCACCGGGCAGCGGCAAATCCATGCTCGCCGCACGCCTGCCGGGGATACTGCCCCCCATGACC
GACGAACAGGCCCTGGAACACGCCATGATCCACTCCATCAGCGGACAACCCTTCGAGCCTGCCCGCTGGAAACAGCGCCA
AATGAGAGCCCCGCATCACACAGCTTCCGCCGTCGCCCTGGTGGGCGGGGGCAGCAACCCAAGGCCGGGAGAGATATCTT
TGGCGCACCACAACATTTTATTTTTGGACGAAGTGGCCGAGTTCCCCCGCGCTGTCCTGGACGTCCTGCGCGAACCCCTG
GAAACCGGTTATATCAACATCTCCCGCGCCAGCCGCAGCGCCCGCTTTCCCGCCCGCTTCCAACTGGTGGCCGCCATGAA
CCCCTGCCCCTGCGGCCATCTGGGCGACCCCTTAAGGGCCTGCCGCTGCACCGCCGAGCAGGTGGCCCGCTATCAGGGAC
GCATCTCCGGCCCTCTCCTGGACCGTATCGACATCCAGGTACAGGTGCCCGCGCAACCGGCGGAAGCCATCCTGTCCCCA
TCCGGAAAGGAAACCTCCAGCGCCCGGGTACGGGAACAGGTGACCCAGGCCCACGAGCGCCAGCTGCGCCGCCAGGGCTG
CAGCAACGCCCATCTGCAAAACAGCGCCCTCGAAGAACACTGCAAACTCAATGAAGCCAGCCGCGCCCTGCTCATGCAGG
CAATGAACAAGCTGGGCCTTTCCGCCCGCGCCTATCACCGCATCCTGCGGGTGGCGCGTACCATTGCCGATCTGGAAGGC
ATGGACAACCTCCAGCTGCCTCATGTTACCGAAGCCATTGGCTACCGGCGCATGGACAAGGCCCGCTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-496)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U6GKQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.8

99.602

0.546
  comM Haemophilus influenzae Rd KW20

53.892

99.801

0.538
  comM Glaesserella parasuis strain SC1401

52.871

100

0.532
  comM Vibrio campbellii strain DS40M4

53

99.602

0.528
  comM Legionella pneumophila str. Paris

50.499

99.801

0.504
  comM Legionella pneumophila strain ERS1305867

50.499

99.801

0.504
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.187

100

0.458

Multiple sequence alignment