Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHS57_RS11985 Genome accession   NZ_CP107968
Coordinates   2723828..2725759 (+) Length   643 a.a.
NCBI ID   WP_041990053.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2718828..2730759
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS11970 (OHS57_11990) - 2720020..2720334 (+) 315 WP_328581902.1 YtxH domain-containing protein -
  OHS57_RS11975 (OHS57_11995) - 2720426..2721904 (+) 1479 WP_328581903.1 FGGY family carbohydrate kinase -
  OHS57_RS11980 (OHS57_12000) rcrP 2722095..2723828 (+) 1734 WP_041990054.1 ABC transporter ATP-binding protein Regulator
  OHS57_RS11985 (OHS57_12005) rcrQ 2723828..2725759 (+) 1932 WP_041990053.1 ABC transporter ATP-binding protein Regulator
  OHS57_RS11990 (OHS57_12010) - 2725854..2726951 (-) 1098 Protein_2378 RNA polymerase sigma factor -
  OHS57_RS11995 (OHS57_12015) dnaG 2727177..2729108 (-) 1932 WP_041990052.1 DNA primase -
  OHS57_RS12000 (OHS57_12020) - 2729195..2730469 (-) 1275 WP_041990049.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69713.10 Da        Isoelectric Point: 5.4391

>NTDB_id=650405 OHS57_RS11985 WP_041990053.1 2723828..2725759(+) (rcrQ) [Streptomyces sp. NBC_00370]
MSGAGRMMAAGAGAPTQRSMDFKGSGKRLLRRLAREKATLIWMVTAGILSVGLSVTGPKILGKATDLIFAGVVGRQFPAG
TSKAQAIAALRAKGDGSMADLLSGVDFTPGDGIDFGAVGNVLLITLVIYLGAGLLQLVSSRLSIRVINRTVYRMREDVQA
KLSRLPLSYFDRQARGEVLSRATNDVDNISQTMQQTMGQLINSVLTILGVLIVMFWISWLLALVALVTVPLSVFVATRVG
KRSQPQFVQQWRSTGKLNAHVEEMYTGHALVKVFGRQDESAEAFAEHNEQMYEAAFKAQFNSGMMQPLMLFISNINYVLI
AVIGGLRVASGALSIGDVQAFIQYSRQFSQPLTQVASMANLIQSGVASAERIFELLDAEEQEKDAPAVERLREPQGRVAL
EHVAFRYDPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTSGRILLDGMDVRNMSREELRSGIGMVLQD
TWLFGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMEDGAIVEQGTHDELLAAEGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=650405 OHS57_RS11985 WP_041990053.1 2723828..2725759(+) (rcrQ) [Streptomyces sp. NBC_00370]
ATGAGCGGTGCGGGACGCATGATGGCGGCCGGGGCCGGCGCTCCTACGCAGCGGTCCATGGATTTCAAGGGGTCGGGCAA
GCGGCTGCTGCGCCGGCTGGCGCGGGAGAAGGCCACCCTGATCTGGATGGTCACGGCCGGGATACTGAGCGTCGGGCTCT
CGGTGACCGGCCCGAAGATACTGGGCAAGGCCACCGACCTGATCTTCGCGGGTGTCGTCGGCCGGCAGTTCCCCGCCGGC
ACCTCCAAGGCGCAGGCCATCGCGGCGCTGCGTGCGAAGGGCGACGGGTCGATGGCCGACCTGCTGTCCGGCGTCGACTT
CACCCCCGGTGACGGGATCGACTTCGGCGCCGTCGGCAACGTCCTGCTGATCACCCTGGTGATCTACCTGGGCGCCGGGC
TGCTGCAGCTGGTGTCGTCGCGGCTGTCCATCCGGGTGATCAACCGCACCGTGTACCGGATGCGCGAGGACGTACAGGCC
AAGCTGTCGCGGCTGCCGCTGTCGTACTTCGACCGGCAGGCGCGCGGCGAGGTCCTGAGCCGGGCGACGAACGACGTCGA
CAACATCTCGCAGACCATGCAGCAGACGATGGGCCAGCTGATCAACTCGGTGCTGACCATCCTCGGCGTGCTGATCGTGA
TGTTCTGGATCTCCTGGCTGCTGGCGCTGGTCGCGCTCGTGACGGTGCCGCTGTCGGTCTTCGTCGCGACCCGGGTCGGC
AAGCGGTCGCAGCCGCAGTTCGTGCAGCAGTGGAGGTCCACGGGCAAGTTGAACGCGCACGTGGAGGAGATGTACACCGG
GCACGCCCTGGTGAAGGTCTTCGGCCGGCAGGACGAGTCGGCGGAGGCGTTCGCCGAGCACAACGAGCAGATGTACGAGG
CCGCGTTCAAGGCGCAGTTCAACAGCGGGATGATGCAGCCGCTGATGCTGTTCATCTCCAACATCAACTATGTGCTGATC
GCGGTCATCGGCGGGCTGCGGGTCGCTTCGGGCGCGCTGTCGATCGGTGACGTCCAGGCCTTCATCCAGTACTCACGGCA
GTTCTCCCAGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGATCCAGTCGGGCGTCGCGTCCGCGGAGCGGATCTTCG
AACTGCTCGACGCCGAGGAGCAGGAGAAGGACGCCCCCGCCGTCGAGCGGCTGCGCGAGCCGCAGGGCCGGGTCGCGCTG
GAGCATGTGGCCTTCCGGTACGACCCGGAGAAGCCGCTGATCGAGGACCTGTCGCTGTCGGTGGAGCCGGGCCAGACGGT
CGCGATCGTCGGCCCGACGGGCGCCGGCAAGACCACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGTCGGGCC
GGATCCTGCTGGACGGCATGGACGTGCGGAACATGTCCCGGGAGGAACTGCGGTCCGGGATAGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGCACGATCGCGGAGAACATCGCCTACGGGGCTTCCCGCGAGGTGACGCGCGAGGAGATCGAGGA
GGCGGCGCGCGCCGCGCACGCCGACCGGTTCGTCCGTACGCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGTT
CGGGCGTCAGCGCCGGTGAGAAGCAACTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACGAGCTCCGTCGACACCCGTACGGAAGTGCTGATCCAGAAGGCGATGGCGCGGCTCGCCCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACGATCAGGGACGCCGATGTGATCCTGGTGATGGAGGACGGCGCGATCGTCGAAC
AGGGCACGCACGACGAGCTGTTGGCGGCGGAAGGCGCGTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(59-352)

ABC transporter (ABC_tran)

(415-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.939

82.115

0.361