Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHS57_RS11980 Genome accession   NZ_CP107968
Coordinates   2722095..2723828 (+) Length   577 a.a.
NCBI ID   WP_041990054.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00370     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2717095..2728828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS57_RS11940 (OHS57_11960) - 2717759..2718058 (+) 300 WP_041990062.1 trypco2 family protein -
  OHS57_RS11945 (OHS57_11965) - 2718091..2718798 (+) 708 WP_328581900.1 RraA family protein -
  OHS57_RS11950 (OHS57_11970) - 2718801..2719199 (+) 399 WP_328581901.1 hypothetical protein -
  OHS57_RS11970 (OHS57_11990) - 2720020..2720334 (+) 315 WP_328581902.1 YtxH domain-containing protein -
  OHS57_RS11975 (OHS57_11995) - 2720426..2721904 (+) 1479 WP_328581903.1 FGGY family carbohydrate kinase -
  OHS57_RS11980 (OHS57_12000) rcrP 2722095..2723828 (+) 1734 WP_041990054.1 ABC transporter ATP-binding protein Regulator
  OHS57_RS11985 (OHS57_12005) rcrQ 2723828..2725759 (+) 1932 WP_041990053.1 ABC transporter ATP-binding protein Regulator
  OHS57_RS11990 (OHS57_12010) - 2725854..2726951 (-) 1098 Protein_2378 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62905.10 Da        Isoelectric Point: 6.9736

>NTDB_id=650404 OHS57_RS11980 WP_041990054.1 2722095..2723828(+) (rcrP) [Streptomyces sp. NBC_00370]
MLIRLLRSHLAPYKRPISILVVLQLLQTVATLYLPSLNADIIDNGVVAGDSGYILRFGGIMLGVSVVQVICNIGAVFYGA
RTASALGRDVRAAVFSRVQSFSAREVGQFGAPTLITRTTNDVQQVQMLVLMSFTLMVSAPIMCVGGIIAALGQDVPLSTV
LLAVVPVLAVSVSLIVRRMRPLFRAMQVKLDSVNRVLREQITGNRVIRAFVRDEYEKGRFKEANTELTDLQLATGRLMSL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLSYLMQIVMAVMMATFMFIMVPRAEVCAERIEEVLDTRSSVVP
PENPVRELRRHGHLEIRDAEFHYPGAEESVLKNISLTAKPGEMTAIIGSTGSGKSTLLHLIPRLIDTTGGEVLVDNQDVR
ELDPVLLAKTVSLVPQKPYLFAGTVATNLRYGNPDATDDELWHALEVAQAKDFVTALEGGLNAPIAQGGSNVSGGQRQRL
AIARTLTQRPEIYLFDDSFSALDYATDAALRRALLRETAQATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMAAN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=650404 OHS57_RS11980 WP_041990054.1 2722095..2723828(+) (rcrP) [Streptomyces sp. NBC_00370]
GTGCTCATTCGACTCCTGCGATCCCATCTCGCACCGTACAAAAGACCCATATCCATCCTTGTGGTGCTGCAGCTCCTCCA
GACCGTCGCCACGCTCTATCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGGCCGGTGACTCCGGATACA
TCCTGCGCTTCGGCGGCATCATGCTCGGCGTCAGCGTGGTCCAGGTGATCTGCAACATCGGCGCCGTGTTCTACGGCGCG
CGGACCGCTTCGGCCCTCGGCCGGGACGTCAGGGCCGCCGTCTTCTCCCGCGTACAGAGCTTCTCCGCCCGCGAGGTCGG
GCAGTTCGGGGCGCCGACCCTGATCACCCGCACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGTCGTTCA
CGCTGATGGTGTCCGCGCCCATCATGTGTGTCGGCGGCATCATCGCCGCGCTCGGCCAGGACGTCCCGCTGTCCACGGTG
CTGCTGGCCGTCGTGCCGGTCCTCGCCGTCTCCGTCTCGCTCATCGTCCGGCGGATGCGCCCGCTGTTCCGCGCCATGCA
GGTGAAGCTCGACAGCGTGAACCGCGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCAGGGCCTTCGTCAGGGACG
AGTACGAGAAGGGGCGGTTCAAGGAGGCCAACACCGAGCTGACCGACCTCCAGCTGGCCACCGGACGGCTGATGTCGCTG
ATGTTCCCGACCGTCATGACGGTGGTGAACCTGTCGTCGATCGCCGTCGTCTGGTTCGGCGCGCACCGCATCGACAGCGG
TGGCATGCAGATCGGCGCGCTGACCGCGTTCCTCTCGTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCCGAAGTGTGCGCCGAGCGGATCGAGGAGGTGCTGGACACCAGGTCGAGCGTGGTGCCG
CCGGAGAACCCGGTACGGGAGCTGCGCAGGCACGGCCATCTGGAGATACGGGACGCGGAGTTCCACTACCCCGGTGCCGA
GGAGTCCGTGCTCAAGAACATCTCGCTGACGGCGAAGCCCGGCGAGATGACGGCGATCATCGGATCGACCGGCAGCGGTA
AGTCGACGCTGCTGCATCTGATCCCCCGGCTGATCGACACGACGGGCGGCGAGGTCCTCGTCGACAACCAGGACGTACGG
GAACTCGACCCGGTGCTGCTGGCGAAGACGGTGAGCCTGGTGCCGCAGAAGCCGTATCTCTTCGCCGGGACCGTCGCCAC
GAATCTGCGCTACGGCAATCCCGACGCGACCGACGACGAGCTGTGGCACGCCCTGGAGGTCGCGCAGGCGAAGGACTTCG
TCACCGCGCTCGAAGGCGGTCTGAACGCCCCCATCGCGCAGGGCGGCTCCAACGTCTCCGGCGGCCAGCGGCAGCGGCTC
GCCATCGCGCGCACGCTCACGCAGCGCCCCGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTCGACTACGCGACGGA
CGCGGCGCTGCGCCGCGCGCTGCTGCGGGAGACGGCGCAGGCGACGGTCGTCATCGTGGCCCAGCGGGTGTCCACCATCC
GTGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGTACGGGCCGCCATCACGAGCTGATGGCGGCGAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCGGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.426

97.747

0.395