Detailed information
Bioinformatically predicted
Overview
| Name | ruvB | Type | Machinery gene |
| Locus tag | H7Q99_RS10155 | Genome accession | NZ_AP021998 |
| Coordinates | 2138765..2139775 (+) | Length | 336 a.a. |
| NCBI ID | WP_000568520.1 | Uniprot ID | - |
| Organism | Escherichia coli strain WP3-W18-ESBL-07 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 2133765..2144775
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| H7Q99_RS10125 (WP3W18E07_19640) | nudB | 2135489..2135941 (+) | 453 | WP_077249130.1 | dihydroneopterin triphosphate diphosphatase | - |
| H7Q99_RS10130 (WP3W18E07_19650) | yebC | 2135970..2136710 (+) | 741 | WP_000907234.1 | YebC/PmpR family DNA-binding transcriptional regulator | - |
| H7Q99_RS10135 (WP3W18E07_19660) | ruvC | 2136745..2137266 (+) | 522 | WP_001295503.1 | crossover junction endodeoxyribonuclease RuvC | - |
| H7Q99_RS10140 (WP3W18E07_19670) | yebB | 2137268..2137870 (-) | 603 | WP_001024911.1 | YebB family permuted papain-like enzyme | - |
| H7Q99_RS10145 | yobI | 2137941..2138006 (+) | 66 | WP_072093883.1 | stress response small protein YobI | - |
| H7Q99_RS10150 (WP3W18E07_19680) | ruvA | 2138145..2138756 (+) | 612 | WP_000580323.1 | Holliday junction branch migration protein RuvA | - |
| H7Q99_RS10155 (WP3W18E07_19690) | ruvB | 2138765..2139775 (+) | 1011 | WP_000568520.1 | Holliday junction branch migration DNA helicase RuvB | Machinery gene |
| H7Q99_RS10160 | - | 2139885..2141233 (+) | 1349 | WP_099156422.1 | IS3-like element IS1397 family transposase | - |
| H7Q99_RS10165 (WP3W18E07_19720) | znuB | 2141427..2142212 (-) | 786 | WP_000571478.1 | zinc ABC transporter permease subunit ZnuB | - |
| H7Q99_RS10170 (WP3W18E07_19730) | znuC | 2142209..2142964 (-) | 756 | WP_000202996.1 | zinc ABC transporter ATP-binding protein ZnuC | - |
| H7Q99_RS10175 (WP3W18E07_19740) | znuA | 2143043..2143975 (+) | 933 | WP_001347089.1 | zinc ABC transporter substrate-binding protein ZnuA | - |
Sequence
Protein
Download Length: 336 a.a. Molecular weight: 37163.73 Da Isoelectric Point: 4.7818
>NTDB_id=64979 H7Q99_RS10155 WP_000568520.1 2138765..2139775(+) (ruvB) [Escherichia coli strain WP3-W18-ESBL-07]
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMS
MIEADRLISAGTTLPEDVADRAIRPKLLEEYVGQPQVRSQMEIFIKAAKLRGDALDHLLIFGPPGLGKTTLANIVANEMG
VNLRTTSGPVLEKAGDLAAMLTNLEPHDVLFIDEIHRLSPVVEEVLYPAMEDYQLDIMIGEGPAARSIKIDLPPFTLIGA
TTRAGSLTSPLRDRFGIVQRLEFYQVPDLQYIVSRSARFMGLEMSDDGALEVARRARGTPRIANRLLRRVRDFAEVKHDG
TISADIAAQALDMLNVDAEGFDYMDRKLLLAVIDKFFGGPVGLDNLAAAIGEERETIEDVLEPYLIQQGFLQRTPRGRMA
TTRAWNHFGITPPEMS
Nucleotide
Download Length: 1011 bp
>NTDB_id=64979 H7Q99_RS10155 WP_000568520.1 2138765..2139775(+) (ruvB) [Escherichia coli strain WP3-W18-ESBL-07]
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGCGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGTCGTAA
ATGATTGAAGCAGACCGTCTGATTTCTGCCGGTACCACTTTGCCGGAAGATGTGGCAGATCGCGCCATTCGCCCTAAATT
ACTGGAAGAGTATGTTGGTCAGCCGCAGGTTCGTTCGCAGATGGAGATTTTCATCAAAGCAGCGAAACTGCGCGGCGATG
CCCTCGATCATCTATTGATTTTTGGTCCTCCGGGGTTGGGTAAAACTACGCTTGCCAATATTGTCGCCAATGAAATGGGC
GTTAATTTACGCACGACTTCTGGTCCGGTGCTGGAAAAGGCGGGCGATCTGGCAGCAATGCTCACTAACCTTGAACCACA
CGATGTACTGTTTATTGATGAGATCCACCGTCTTTCACCAGTGGTGGAAGAGGTGTTGTATCCGGCAATGGAAGATTACC
AACTGGATATCATGATTGGTGAAGGTCCGGCGGCACGCTCCATTAAAATTGATTTGCCGCCGTTTACCCTGATTGGTGCA
ACCACGCGCGCAGGTTCGCTGACATCACCGTTGCGCGATCGTTTTGGTATTGTGCAACGTCTGGAGTTTTATCAGGTGCC
GGATCTGCAATATATCGTCAGTCGCAGCGCACGCTTTATGGGGCTTGAGATGAGTGATGACGGCGCGCTGGAAGTTGCTC
GTCGTGCGCGCGGTACGCCACGTATTGCCAACCGTCTGCTGCGTCGAGTGCGTGATTTCGCCGAAGTGAAGCACGATGGC
ACCATCTCGGCAGATATCGCTGCTCAGGCGCTGGATATGTTGAATGTCGATGCTGAAGGTTTCGATTATATGGACCGCAA
ATTGTTGCTGGCGGTAATCGATAAGTTCTTTGGCGGGCCGGTAGGTCTGGATAACCTGGCGGCAGCCATTGGCGAAGAAC
GTGAAACCATTGAGGATGTACTGGAACCTTATTTGATTCAGCAAGGCTTTTTGCAGCGTACACCGCGTGGGCGTATGGCG
ACGACGCGGGCGTGGAATCACTTTGGCATAACGCCGCCAGAAATGTCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ruvB | Bacillus subtilis subsp. subtilis str. 168 |
60.486 |
97.917 |
0.592 |
| ruvB | Streptococcus pneumoniae TIGR4 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae R6 |
58.934 |
94.94 |
0.56 |
| ruvB | Streptococcus pneumoniae D39 |
58.934 |
94.94 |
0.56 |
| ruvB | Synechocystis sp. PCC 6803 |
53.251 |
96.131 |
0.512 |
| ruvB | Helicobacter pylori 26695 |
52.038 |
94.94 |
0.494 |