Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   H7Q99_RS09610 Genome accession   NZ_AP021998
Coordinates   2049313..2049969 (+) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain WP3-W18-ESBL-07     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2044313..2054969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7Q99_RS09580 (WP3W18E07_18590) dcyD 2045192..2046178 (+) 987 WP_001128232.1 D-cysteine desulfhydrase -
  H7Q99_RS09585 (WP3W18E07_18600) tcyL 2046193..2046861 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  H7Q99_RS09590 (WP3W18E07_18610) tcyN 2046858..2047610 (+) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  H7Q99_RS09595 (WP3W18E07_18620) sdiA 2047840..2048562 (+) 723 WP_001154255.1 transcriptional regulator SdiA -
  H7Q99_RS09600 (WP3W18E07_18630) yecF 2048630..2048854 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  H7Q99_RS09605 yecU 2048841..2049017 (-) 177 WP_001307856.1 protein YecU -
  H7Q99_RS09610 (WP3W18E07_18640) letA 2049313..2049969 (+) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  H7Q99_RS09615 (WP3W18E07_18650) uvrC 2049966..2051798 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  H7Q99_RS09620 (WP3W18E07_18660) pgsA 2051855..2052403 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  H7Q99_RS09640 (WP3W18E07_18670) - 2052987..2054003 (-) 1017 WP_001531780.1 tyrosine-type recombinase/integrase -
  H7Q99_RS09645 (WP3W18E07_18680) - 2053972..2054235 (-) 264 WP_000833838.1 DUF4224 domain-containing protein -
  H7Q99_RS09650 (WP3W18E07_18690) - 2054445..2054627 (-) 183 WP_000916334.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=64977 H7Q99_RS09610 WP_000611328.1 2049313..2049969(+) (letA) [Escherichia coli strain WP3-W18-ESBL-07]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=64977 H7Q99_RS09610 WP_000611328.1 2049313..2049969(+) (letA) [Escherichia coli strain WP3-W18-ESBL-07]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482

Multiple sequence alignment