Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OHS81_RS15000 Genome accession   NZ_CP107940
Coordinates   3423711..3425606 (-) Length   631 a.a.
NCBI ID   WP_328391173.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3418711..3430606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS14980 (OHS81_14985) - 3419081..3420106 (-) 1026 WP_328385273.1 LacI family DNA-binding transcriptional regulator -
  OHS81_RS14985 (OHS81_14990) - 3420185..3421039 (-) 855 WP_328385274.1 response regulator transcription factor -
  OHS81_RS14990 (OHS81_14995) - 3421756..3422325 (-) 570 WP_328385275.1 helix-turn-helix domain-containing protein -
  OHS81_RS14995 (OHS81_15000) - 3422409..3423329 (+) 921 WP_328385276.1 NADP-dependent oxidoreductase -
  OHS81_RS15000 (OHS81_15005) rcrQ 3423711..3425606 (-) 1896 WP_328391173.1 ABC transporter ATP-binding protein Regulator
  OHS81_RS15005 (OHS81_15010) rcrP 3425720..3427453 (-) 1734 WP_328385277.1 ABC transporter ATP-binding protein Regulator
  OHS81_RS15010 (OHS81_15015) - 3427661..3427906 (+) 246 WP_328391175.1 MoaD/ThiS family protein -
  OHS81_RS15015 (OHS81_15020) - 3427917..3429377 (+) 1461 WP_328385278.1 hypothetical protein -
  OHS81_RS15020 (OHS81_15025) - 3429558..3430259 (+) 702 WP_328385279.1 DUF2993 domain-containing protein -

Sequence

Protein


Download         Length: 631 a.a.        Molecular weight: 68198.70 Da        Isoelectric Point: 6.5880

>NTDB_id=649717 OHS81_RS15000 WP_328391173.1 3423711..3425606(-) (rcrQ) [Streptomyces sp. NBC_00400]
MGGQPAEKSMDFKGSGKRLLAQMRPERAVISVALALGVLSVALTVVGPKVLGHATDLIMSGIIGRQLPDGLTKAQAADQL
RAHGQGGLADMIAAMPVVPGHGIDFGTVGRILLWVTLIYVGASLFGFVQARIATRVVQRTVFRLREQVEEKLARLPLSYF
DRQQRGEVLSRATNDIDNIQQTLQQTLSQIVASLLTIVGVLVVMFWISWLLALVALVTVPVSVVVATKVGKRAQPQFVQQ
WKTTGKLNAHIEEMYTGHSLVKVFGRQRESAELFREQNEALYAAGFKAQFISGIIQPAMMFIGNLNYVLVAVVGGLRVAS
GALSIGDVQAFIQYSRQFSQPLTQVASMANLVQSGVASAERVFELLDAEEQAPDPERPARPDRIEGRVAFEDVSFRYAED
KPLIEDLSLAVHPGQTVAIVGPTGAGKTTLVNLLMRFYEVRGGRITLDGTDIAAMSREELRAHIGMVLQDTWLFGGTIAE
NIAYGAPAGTPMDKIVAAARATHVDRFVRTLPDGYDTVLDDEGSNVSVGEKQLITIARAFLAEPAILVLDEATSSVDTRT
EVLIQHAMAQLRTGRTSFVIAHRLSTIRDADVILVMENGAIVEQGPHDALLAANGAYARLYAAQFAEAMTG

Nucleotide


Download         Length: 1896 bp        

>NTDB_id=649717 OHS81_RS15000 WP_328391173.1 3423711..3425606(-) (rcrQ) [Streptomyces sp. NBC_00400]
ATGGGCGGCCAGCCCGCCGAGAAGTCGATGGACTTCAAGGGCTCCGGCAAACGGCTGCTGGCCCAGATGCGGCCCGAGCG
CGCCGTCATCTCCGTCGCGCTGGCGCTGGGCGTACTGAGCGTGGCGCTCACGGTCGTGGGCCCCAAGGTCCTCGGCCACG
CCACCGACCTGATCATGTCCGGCATCATCGGCCGCCAGCTGCCCGACGGCCTCACCAAGGCCCAGGCGGCGGACCAGCTG
CGCGCCCACGGCCAGGGCGGTCTCGCCGACATGATCGCCGCGATGCCGGTCGTCCCCGGCCACGGCATCGACTTCGGCAC
CGTCGGCCGGATCCTGCTCTGGGTCACCCTGATCTACGTGGGTGCCTCGCTGTTCGGCTTCGTCCAGGCCAGGATCGCCA
CCCGCGTCGTCCAGCGCACGGTCTTCCGCCTGCGCGAACAGGTCGAGGAGAAGCTGGCGCGGCTGCCGCTGAGCTACTTC
GACCGGCAGCAGCGCGGTGAAGTGCTCTCCCGGGCGACCAACGACATCGACAACATCCAGCAGACGCTGCAGCAGACCCT
CAGCCAGATCGTGGCCTCGCTGCTGACCATCGTCGGGGTGCTGGTCGTGATGTTCTGGATCTCGTGGCTGCTGGCGCTGG
TCGCCCTGGTCACGGTCCCGGTCTCGGTCGTCGTCGCCACCAAGGTCGGCAAGCGCGCCCAGCCGCAGTTCGTCCAGCAG
TGGAAGACCACCGGCAAGCTCAATGCGCACATCGAGGAGATGTACACCGGCCACAGCCTGGTGAAGGTCTTCGGCCGCCA
GCGGGAGTCCGCCGAGCTGTTCCGCGAACAGAACGAGGCCCTGTACGCCGCCGGGTTCAAGGCCCAGTTCATCTCCGGGA
TCATCCAGCCCGCGATGATGTTCATCGGCAACCTCAACTACGTCCTGGTGGCCGTGGTCGGCGGCCTCCGCGTCGCCTCC
GGGGCCCTGTCCATCGGCGATGTCCAGGCCTTCATCCAGTACTCCCGGCAGTTCAGCCAGCCGCTCACCCAGGTCGCCTC
GATGGCCAACCTCGTCCAGTCCGGTGTCGCCTCCGCCGAGCGGGTCTTCGAACTCCTCGACGCCGAGGAGCAGGCCCCCG
ACCCCGAGCGGCCGGCCCGGCCCGACCGCATCGAGGGCCGGGTCGCCTTCGAGGACGTCTCCTTCCGTTACGCGGAGGAC
AAGCCGCTCATCGAGGACCTGTCGCTGGCCGTCCACCCCGGCCAGACGGTGGCGATCGTCGGCCCGACGGGCGCCGGCAA
GACCACCCTCGTCAACCTCCTGATGCGCTTCTACGAGGTACGCGGCGGCCGGATCACCCTCGACGGCACCGACATCGCCG
CGATGTCGCGCGAGGAACTGCGCGCGCACATCGGCATGGTCCTCCAGGACACCTGGCTCTTCGGCGGCACGATCGCCGAG
AACATCGCCTACGGAGCCCCCGCGGGCACCCCGATGGACAAGATCGTGGCGGCCGCCCGCGCCACCCACGTCGACCGCTT
CGTACGCACCCTGCCGGACGGCTACGACACGGTGCTCGACGACGAGGGCAGCAATGTCTCCGTCGGCGAGAAGCAGCTGA
TCACCATCGCCCGCGCCTTCCTCGCCGAACCCGCGATCCTCGTTCTCGACGAGGCCACCAGCTCGGTCGACACCCGCACC
GAAGTCCTCATCCAGCACGCCATGGCCCAGCTCCGCACCGGCCGCACCAGCTTCGTCATCGCCCACCGCCTCTCCACGAT
CCGCGACGCGGACGTCATCCTGGTGATGGAGAACGGCGCGATCGTCGAACAGGGGCCGCACGATGCGTTGTTGGCGGCGA
ACGGCGCGTATGCGCGCTTGTATGCGGCGCAGTTCGCCGAGGCGATGACGGGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(405-554)

ABC transporter transmembrane region (ABC_membrane)

(48-342)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.842

98.098

0.41