Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OHS81_RS15005 Genome accession   NZ_CP107940
Coordinates   3425720..3427453 (-) Length   577 a.a.
NCBI ID   WP_328385277.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00400     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3420720..3432453
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS81_RS14990 (OHS81_14995) - 3421756..3422325 (-) 570 WP_328385275.1 helix-turn-helix domain-containing protein -
  OHS81_RS14995 (OHS81_15000) - 3422409..3423329 (+) 921 WP_328385276.1 NADP-dependent oxidoreductase -
  OHS81_RS15000 (OHS81_15005) rcrQ 3423711..3425606 (-) 1896 WP_328391173.1 ABC transporter ATP-binding protein Regulator
  OHS81_RS15005 (OHS81_15010) rcrP 3425720..3427453 (-) 1734 WP_328385277.1 ABC transporter ATP-binding protein Regulator
  OHS81_RS15010 (OHS81_15015) - 3427661..3427906 (+) 246 WP_328391175.1 MoaD/ThiS family protein -
  OHS81_RS15015 (OHS81_15020) - 3427917..3429377 (+) 1461 WP_328385278.1 hypothetical protein -
  OHS81_RS15020 (OHS81_15025) - 3429558..3430259 (+) 702 WP_328385279.1 DUF2993 domain-containing protein -
  OHS81_RS15025 (OHS81_15030) - 3430906..3431751 (+) 846 WP_328385280.1 sulfurtransferase -
  OHS81_RS15030 (OHS81_15035) - 3431792..3432079 (+) 288 WP_030085405.1 DUF1416 domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62909.36 Da        Isoelectric Point: 7.1119

>NTDB_id=649718 OHS81_RS15005 WP_328385277.1 3425720..3427453(-) (rcrP) [Streptomyces sp. NBC_00400]
MLVRLARAHLRPHRRSISVIVLLQLIQTLATLYLPTLNADIIDNGVVKGDTGYILGVGGFMVAVTLLQIVCAIGAVYFGA
RTAMALGRDIRAAVFDRVQSFSAREMGTFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGVIMALNQDVPLSGL
LLVIVPVLGILVSLIVRRMRPLFRGVQERIDTVNRVLREQITGIRVIRAFVRDRHERERFAGASTDLYDVSLRAGRLMSM
MFPLVMLIVNLSSVAVVWFGGLRIDSGAMQIGALTAFLSYLMYILMSIMMATFMVMMLPRAEVCAERIQEVLATDSSVTP
PPHPVTELRRHGELELRGVEFRFPGAEQPVLKDISLIARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGTVLVDGEDVR
TLDQETLARAIGLVPQKPYLFSGTVATNLRYGNPDATDDELWHALETAQARDFVERMEGSLDAPIAQGGGNVSGGQRQRL
AIARALVRRPEIYLFDDSFSALDYATDAALRAALSRETDRATVVIVAQRVATIRGADRIVVLDEGRVVGTGTHTELMAGN
ETYREIVLSQLTEQEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=649718 OHS81_RS15005 WP_328385277.1 3425720..3427453(-) (rcrP) [Streptomyces sp. NBC_00400]
GTGTTGGTCCGACTCGCACGGGCGCATTTGCGGCCCCACCGGCGCTCGATATCCGTGATCGTGCTGCTTCAGCTGATCCA
GACCCTGGCAACCCTCTATCTGCCCACCCTCAACGCCGACATCATCGACAACGGTGTCGTGAAGGGGGACACGGGCTACA
TCCTCGGCGTCGGCGGATTCATGGTCGCCGTCACCCTGCTGCAGATCGTCTGCGCGATCGGCGCCGTCTACTTCGGTGCC
CGTACGGCCATGGCGCTCGGCCGGGACATCCGTGCCGCGGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGATGGG
CACCTTCGGCGCGCCGTCGCTGATCACCCGCACCACCAATGACGTCCAGCAGGTCCAGATGCTGGTGCTGATGACGTTCA
CGATGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCGTCATCATGGCGCTCAACCAGGACGTGCCGCTGTCCGGCCTC
CTCCTGGTCATCGTCCCGGTCCTCGGGATTCTCGTCTCACTGATCGTGCGCCGGATGCGGCCGCTGTTCCGCGGGGTGCA
GGAGCGCATCGACACCGTCAACCGCGTGCTGCGCGAGCAGATCACCGGCATCCGCGTCATCCGCGCCTTCGTCCGCGACC
GGCATGAGCGCGAGCGGTTCGCCGGGGCCAGCACCGACCTCTACGACGTGTCGCTGCGCGCCGGCCGGCTGATGTCGATG
ATGTTCCCGCTGGTCATGCTGATCGTGAACCTCTCCAGCGTGGCCGTCGTCTGGTTCGGCGGGCTGCGCATCGACAGCGG
TGCCATGCAGATCGGCGCGCTGACGGCGTTCCTCAGCTACCTGATGTACATCCTGATGTCGATCATGATGGCAACGTTCA
TGGTGATGATGCTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTGCTGGCGACCGACTCCAGCGTCACCCCG
CCCCCGCACCCCGTCACCGAACTCCGCCGCCACGGCGAACTGGAACTGCGCGGCGTCGAGTTCCGCTTCCCCGGCGCCGA
GCAGCCGGTCCTCAAGGACATCTCGCTGATCGCCCGCCCCGGCGAGACCACCGCCGTCATCGGCTCCACGGGCTCCGGCA
AGTCGACCCTCCTCGGGCTCGTCCCGCGGCTGTTCGACGCGACCGGCGGCACGGTCCTGGTCGACGGCGAGGACGTCCGC
ACCCTCGACCAGGAAACGCTGGCCAGGGCCATCGGCCTGGTCCCGCAGAAGCCGTACCTCTTCTCCGGCACCGTCGCCAC
CAACCTGCGCTACGGCAACCCGGACGCCACCGACGACGAGCTGTGGCACGCCCTGGAGACCGCCCAGGCGCGGGACTTCG
TCGAGCGGATGGAAGGCAGCCTGGACGCGCCCATCGCGCAGGGCGGCGGCAATGTCTCCGGCGGCCAGCGCCAGCGGCTG
GCGATCGCCCGCGCCCTGGTGCGACGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCGACGGA
CGCCGCGCTGCGGGCCGCGCTCTCCCGCGAGACCGACCGCGCGACGGTGGTGATCGTCGCCCAGCGGGTCGCCACGATCC
GCGGCGCCGACCGGATCGTCGTCCTCGACGAAGGCCGGGTCGTCGGCACCGGCACCCACACCGAGCTGATGGCCGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTCACCGAGCAGGAGGCGGCGTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-287)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.709

95.147

0.378