Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG389_RS17885 Genome accession   NZ_CP107924
Coordinates   3918936..3919556 (+) Length   206 a.a.
NCBI ID   WP_328299498.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3913936..3924556
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS17865 (OG389_17870) - 3914573..3915082 (+) 510 WP_328303871.1 GNAT family N-acetyltransferase -
  OG389_RS17870 (OG389_17875) - 3915117..3916541 (-) 1425 WP_328299496.1 M1 family metallopeptidase -
  OG389_RS17875 (OG389_17880) - 3916577..3917128 (-) 552 WP_328299497.1 heme-binding protein -
  OG389_RS17880 (OG389_17885) - 3917698..3918879 (+) 1182 WP_328303872.1 sensor histidine kinase -
  OG389_RS17885 (OG389_17890) vraR 3918936..3919556 (+) 621 WP_328299498.1 response regulator transcription factor Regulator
  OG389_RS17890 (OG389_17895) - 3919725..3920336 (+) 612 WP_328299499.1 nuclear transport factor 2 family protein -
  OG389_RS17895 (OG389_17900) - 3920410..3921389 (+) 980 Protein_3537 IS5 family transposase -
  OG389_RS17900 (OG389_17905) vraR 3921445..3922053 (-) 609 WP_328299500.1 response regulator transcription factor Regulator
  OG389_RS17905 (OG389_17910) - 3922212..3922958 (-) 747 WP_328299501.1 histidine kinase -
  OG389_RS17910 (OG389_17915) - 3923404..3923907 (+) 504 WP_328303874.1 hypothetical protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 21789.04 Da        Isoelectric Point: 6.0101

>NTDB_id=649462 OG389_RS17885 WP_328299498.1 3918936..3919556(+) (vraR) [Streptomyces sp. NBC_00435]
MTTILLCDDHVVVRAGLLALLGSEPDIEVLGEAGSGEEAVALAARLRPDVVLMDLQLGAGIDGVEATRRITTAPNPPHVL
VLTTYDTDADITRAIGAGATGYLLKAERPEELFAAIHSAAQGRTTLSAPVASRVMAHMRGTRPTLTDRELDILGQLARGL
GNRDIARALFISEATVKTHLGRIYDKLGVDTRAGAVSVAKEQRLLP

Nucleotide


Download         Length: 621 bp        

>NTDB_id=649462 OG389_RS17885 WP_328299498.1 3918936..3919556(+) (vraR) [Streptomyces sp. NBC_00435]
ATGACCACGATCCTCCTGTGCGACGACCACGTGGTGGTCCGCGCCGGCCTGCTGGCCCTGCTCGGCAGCGAGCCCGACAT
CGAGGTGCTCGGCGAGGCCGGCAGCGGGGAGGAGGCGGTCGCGCTCGCGGCCAGACTCCGCCCCGACGTGGTCCTGATGG
ACCTCCAGCTGGGCGCGGGCATCGACGGCGTGGAAGCCACCCGCCGCATCACGACCGCCCCGAACCCCCCGCACGTACTC
GTCCTCACCACGTACGACACGGACGCGGACATCACCCGGGCCATCGGCGCGGGCGCCACGGGATACCTCCTGAAGGCGGA
ACGCCCCGAGGAACTCTTCGCCGCGATCCACTCCGCGGCCCAGGGCCGCACCACGCTCTCCGCCCCGGTGGCCAGCCGCG
TGATGGCCCACATGCGCGGCACCCGGCCCACCCTGACCGACCGTGAGCTCGACATCCTCGGCCAGCTGGCCCGCGGCCTC
GGCAACCGCGACATCGCCCGCGCACTGTTCATCAGCGAGGCCACGGTCAAGACCCACCTGGGCCGCATCTACGACAAACT
CGGCGTCGACACCCGCGCGGGCGCGGTCTCGGTGGCCAAGGAACAACGCCTCCTCCCCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(144-199)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

37.864

100

0.379
  letA Legionella pneumophila str. Paris

36.321

100

0.374
  letA Legionella pneumophila strain ERS1305867

36.321

100

0.374
  degU Bacillus subtilis subsp. subtilis str. 168

34.562

100

0.364