Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OG389_RS17900 Genome accession   NZ_CP107924
Coordinates   3921445..3922053 (-) Length   202 a.a.
NCBI ID   WP_328299500.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00435     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3916445..3927053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG389_RS17875 (OG389_17880) - 3916577..3917128 (-) 552 WP_328299497.1 heme-binding protein -
  OG389_RS17880 (OG389_17885) - 3917698..3918879 (+) 1182 WP_328303872.1 sensor histidine kinase -
  OG389_RS17885 (OG389_17890) vraR 3918936..3919556 (+) 621 WP_328299498.1 response regulator transcription factor Regulator
  OG389_RS17890 (OG389_17895) - 3919725..3920336 (+) 612 WP_328299499.1 nuclear transport factor 2 family protein -
  OG389_RS17895 (OG389_17900) - 3920410..3921389 (+) 980 Protein_3537 IS5 family transposase -
  OG389_RS17900 (OG389_17905) vraR 3921445..3922053 (-) 609 WP_328299500.1 response regulator transcription factor Regulator
  OG389_RS17905 (OG389_17910) - 3922212..3922958 (-) 747 WP_328299501.1 histidine kinase -
  OG389_RS17910 (OG389_17915) - 3923404..3923907 (+) 504 WP_328303874.1 hypothetical protein -
  OG389_RS17915 (OG389_17920) - 3924113..3924787 (-) 675 WP_328299502.1 pentapeptide repeat-containing protein -
  OG389_RS17920 (OG389_17925) - 3924935..3925927 (+) 993 WP_328303876.1 zinc-binding dehydrogenase -
  OG389_RS17925 (OG389_17930) - 3926058..3926534 (-) 477 WP_328299503.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21349.71 Da        Isoelectric Point: 7.7748

>NTDB_id=649463 OG389_RS17900 WP_328299500.1 3921445..3922053(-) (vraR) [Streptomyces sp. NBC_00435]
MDDHPVVRAGLRALLSGCAEFEVCGEAADGGAALRLVRELAPDLVLMDIRMGPGMCGVETTRRIGRLPAPPRVVVLTSYE
SDAYIVRAVEAGVAGYLLKGSPPDLLFQSLRTVAAGDSALSPSVVSRLMNAYRAPRAALTARETEILELIATGRSNREIG
SALFISGTTVKTHLVHVYEKLGVENRTAAVRAAVDRGLIGLG

Nucleotide


Download         Length: 609 bp        

>NTDB_id=649463 OG389_RS17900 WP_328299500.1 3921445..3922053(-) (vraR) [Streptomyces sp. NBC_00435]
GTGGACGATCATCCCGTCGTGCGGGCCGGGCTGCGGGCGTTGTTGTCCGGGTGTGCCGAGTTCGAGGTGTGCGGGGAGGC
GGCGGACGGGGGTGCGGCGTTGCGGCTGGTTCGTGAGCTGGCTCCGGATCTGGTGCTGATGGACATCCGGATGGGGCCGG
GCATGTGCGGGGTCGAGACCACACGGCGGATCGGCCGGCTGCCCGCGCCGCCCCGGGTGGTGGTACTGACCAGCTACGAG
TCCGACGCGTACATCGTGCGGGCGGTGGAGGCGGGCGTGGCGGGGTACCTGCTGAAGGGGTCCCCGCCCGACCTGCTGTT
CCAGTCGCTGCGGACGGTCGCGGCGGGCGATTCGGCGCTGTCGCCCTCGGTGGTCTCGCGGCTGATGAACGCCTACCGGG
CGCCGCGGGCGGCGCTGACTGCCCGGGAGACCGAGATCCTGGAGCTGATCGCGACGGGCCGCTCCAACCGGGAGATCGGC
TCGGCGCTGTTCATCAGCGGGACGACGGTCAAGACCCACCTCGTGCACGTCTACGAGAAGCTCGGGGTGGAGAACCGTAC
GGCGGCCGTGAGGGCGGCCGTCGACCGCGGACTCATCGGGTTGGGGTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(1-110)

Bacterial regulatory proteins, luxR family (GerE)

(138-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

41.379

100

0.416
  degU Bacillus subtilis subsp. subtilis str. 168

36.199

100

0.396