Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L2Z44_RS15745 Genome accession   NZ_CP091333
Coordinates   3276089..3277576 (+) Length   495 a.a.
NCBI ID   WP_075400784.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain DSM30011-VUB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3271089..3282576
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2Z44_RS15720 (L2Z44_15720) ribD 3272005..3273090 (-) 1086 WP_075400783.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  L2Z44_RS15725 (L2Z44_15725) nrdR 3273106..3273564 (-) 459 WP_000543541.1 transcriptional regulator NrdR -
  L2Z44_RS15730 (L2Z44_15730) - 3273723..3275120 (-) 1398 WP_000738520.1 ammonium transporter -
  L2Z44_RS15735 (L2Z44_15735) glnK 3275178..3275516 (-) 339 WP_000780326.1 P-II family nitrogen regulator -
  L2Z44_RS15740 (L2Z44_15740) - 3275796..3276023 (+) 228 WP_000894500.1 accessory factor UbiK family protein -
  L2Z44_RS15745 (L2Z44_15745) comM 3276089..3277576 (+) 1488 WP_075400784.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L2Z44_RS15750 (L2Z44_15750) - 3277591..3279025 (-) 1435 Protein_3083 PLP-dependent aminotransferase family protein -
  L2Z44_RS15755 (L2Z44_15755) - 3279137..3279913 (+) 777 WP_000845031.1 aldolase -
  L2Z44_RS15760 (L2Z44_15760) - 3279929..3280807 (+) 879 WP_064191944.1 dihydrodipicolinate synthase family protein -
  L2Z44_RS15765 (L2Z44_15765) - 3280850..3281662 (-) 813 WP_049068080.1 TorF family putative porin -
  L2Z44_RS15770 (L2Z44_15770) - 3281719..3281889 (-) 171 WP_000492276.1 hypothetical protein -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 54471.39 Da        Isoelectric Point: 7.5789

>NTDB_id=649281 L2Z44_RS15745 WP_075400784.1 3276089..3277576(+) (comM) [Acinetobacter baumannii strain DSM30011-VUB]
MSFSKIYTRGLLGLHAPLIEVEVHVSQGLPSLTIVGLAEAAVRESKDRVRSAIINSGFQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIASGQLPENCTEDFEFIGELALDGHVRPVSGALTLAMACQQAQHKIVLPVDNSQDISHLPNLECYPVNHL
KEVCEHFLGTQKLAHAQPSAHSNEMPYKFDLADVKGQLRSRRALEIAAAGGHSLLFKGPPGTGKTLLASRLPSILPPLST
RETLEVASIYSISNTPHTFGQRPFRAPHHTASAIALVGGGSHPKPGEITLSHLGVLFLDELPEFDRKVLEVLRQPLESKE
IIISRAARQITYPANFQLIAAMNPCPCGYAFNQDSRCQCSPESIKRYQNRISGPLLDRIDLHIDVPPLKAQELQDPTPAE
DSTTVRQRVIYAYEQQMQRQGCLNQALSPKQLEQHAVLDSTSQRMIEMAQQRLNLSARAYHRVLRVARTIADLAQSEIIQ
SPHLTEALSYRGNHS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=649281 L2Z44_RS15745 WP_075400784.1 3276089..3277576(+) (comM) [Acinetobacter baumannii strain DSM30011-VUB]
ATGTCTTTTTCTAAAATTTATACTCGGGGACTTTTAGGATTACATGCGCCTCTCATTGAGGTTGAGGTGCATGTGAGTCA
AGGCTTACCCTCTCTGACTATTGTAGGCTTAGCGGAAGCAGCAGTTAGGGAAAGTAAGGATAGGGTTCGCTCAGCTATTA
TTAACAGTGGATTTCAATTTCCAACTAAGCGGCTGACCATTAACCTTGCTCCTGCAGATTTGCCCAAAGATGGTTCACGG
CTAGATTTACCAATTGCTTTAGGCATCTTAATTGCCTCTGGTCAACTTCCGGAAAACTGCACAGAAGACTTTGAATTTAT
TGGAGAGTTAGCTCTAGACGGTCATGTAAGACCTGTGTCAGGCGCCTTAACTTTAGCAATGGCATGCCAGCAAGCTCAGC
ATAAAATCGTTTTACCAGTCGATAATAGCCAAGATATTAGCCATTTACCTAATCTTGAGTGTTATCCGGTTAATCATTTA
AAAGAGGTGTGCGAGCACTTTTTAGGCACACAAAAGCTAGCTCACGCACAGCCAAGTGCCCATTCAAATGAAATGCCCTA
TAAATTTGATCTTGCAGATGTTAAAGGTCAGCTACGCTCACGGCGTGCACTAGAAATTGCTGCCGCTGGGGGACATTCCC
TGCTCTTTAAAGGACCACCAGGCACAGGTAAAACTTTATTGGCCTCACGCCTGCCTTCCATTTTACCGCCACTTTCTACT
CGAGAAACGCTTGAAGTTGCAAGTATTTATTCTATTTCAAATACACCACATACTTTTGGGCAGCGTCCATTTCGCGCGCC
CCACCATACAGCATCAGCAATTGCACTGGTTGGGGGCGGTTCACACCCTAAACCGGGTGAAATTACTTTATCTCATTTAG
GTGTTCTATTTTTAGATGAACTCCCCGAGTTTGACAGAAAAGTTCTAGAAGTCTTACGCCAACCGCTTGAGTCAAAAGAA
ATCATTATTTCACGAGCGGCTCGGCAAATTACTTATCCGGCGAACTTTCAGCTCATTGCAGCAATGAATCCTTGTCCATG
TGGGTATGCATTTAATCAAGATAGCCGTTGTCAGTGTTCACCAGAAAGCATTAAACGCTATCAAAACCGCATATCGGGAC
CGTTACTCGACCGCATCGATTTACATATTGATGTACCGCCATTAAAAGCTCAAGAACTGCAAGACCCAACGCCTGCAGAA
GATTCTACAACTGTGCGACAACGTGTGATTTATGCTTATGAACAACAAATGCAAAGACAGGGTTGTTTGAATCAGGCGCT
CTCACCAAAACAACTGGAACAACATGCCGTTCTCGATAGTACTTCACAGCGAATGATTGAAATGGCTCAGCAACGTTTAA
ATTTATCTGCTCGTGCTTATCATCGCGTTTTACGGGTTGCTCGTACTATTGCCGATTTGGCCCAAAGTGAGATCATTCAA
AGTCCTCATCTTACAGAAGCACTCTCTTATCGAGGTAATCATTCTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

51.411

100

0.515
  comM Glaesserella parasuis strain SC1401

50.501

100

0.509
  comM Haemophilus influenzae Rd KW20

49.699

100

0.501
  comM Legionella pneumophila strain ERS1305867

48.996

100

0.493
  comM Legionella pneumophila str. Paris

48.996

100

0.493
  comM Vibrio campbellii strain DS40M4

48.687

100

0.487
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.4

100

0.469