Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L3D22_RS03370 Genome accession   NZ_CP091317
Coordinates   754371..755885 (-) Length   504 a.a.
NCBI ID   WP_253337116.1    Uniprot ID   -
Organism   Lysobacter soli strain RCu6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 749371..760885
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L3D22_RS03350 (L3D22_03355) - 751328..751675 (-) 348 WP_192631788.1 NHLP-related RiPP peptide -
  L3D22_RS03355 (L3D22_03360) - 751916..753088 (+) 1173 WP_253337111.1 putative peptide maturation dehydrogenase -
  L3D22_RS03360 (L3D22_03365) - 753224..753697 (+) 474 WP_253337112.1 hypothetical protein -
  L3D22_RS03365 (L3D22_03370) - 753766..754248 (+) 483 WP_253337114.1 hypothetical protein -
  L3D22_RS03370 (L3D22_03375) comM 754371..755885 (-) 1515 WP_253337116.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L3D22_RS03375 (L3D22_03380) - 755898..756194 (-) 297 WP_115844335.1 accessory factor UbiK family protein -
  L3D22_RS03380 (L3D22_03385) - 756385..756723 (+) 339 WP_115844333.1 P-II family nitrogen regulator -
  L3D22_RS03385 (L3D22_03390) - 756777..757889 (+) 1113 WP_253337123.1 acyltransferase -
  L3D22_RS03390 (L3D22_03395) - 757891..758550 (-) 660 WP_157031385.1 phosphotransferase -
  L3D22_RS03395 (L3D22_03400) speE 758778..759632 (-) 855 WP_192631782.1 polyamine aminopropyltransferase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 52809.74 Da        Isoelectric Point: 8.9516

>NTDB_id=649118 L3D22_RS03370 WP_253337116.1 754371..755885(-) (comM) [Lysobacter soli strain RCu6]
MNLALVHSRARSGVRAPAVRVEVHLAGGLPAMSIVGLPEAAVRESKDRVRAAILCAQFEFPARRITVNLAPADLPKDGGR
FDLPIALGILAASGQIPLEALADGEFLGELGLTGELRAVDGVLPAALAAGDAGRKLIVPAGNGAEAALASRVEVRTARTL
LEVCAHLTGRKPLPFAEAPALERTPGPDLADVRGQAQARRALEIAAAGGHHLLLIGPPGCGKTLLASRLPGLLPEATESE
ALEAAAIASVSGRGLDPARWRARPFRSPHHTASAVALVGGGAQPRPGEISLAHQGVLFLDELPEWDRRALEVLREPLESG
VITVSRAARSAEFPARFQLVAAMNPCPCGWAGDPSGRCRCSPDAVRRYRGRVSGPLLDRIDLHVEVARLPPAALRPDAPA
GESTGTVRARVVEARARQHARAGKTNAVLDQPETAAACRLADADRLLLERAVDALQLSARSMHRIMRVARTIADLDDAAA
IGTAHLTEAISLRRATRGIEAAVA

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=649118 L3D22_RS03370 WP_253337116.1 754371..755885(-) (comM) [Lysobacter soli strain RCu6]
ATGAACCTGGCACTCGTGCACAGCCGTGCACGATCGGGCGTCCGTGCGCCCGCAGTACGCGTTGAAGTGCATCTGGCGGG
CGGATTGCCCGCAATGTCCATCGTCGGTTTGCCCGAAGCGGCGGTACGCGAATCGAAGGATCGCGTGCGCGCGGCGATCC
TCTGCGCGCAGTTCGAGTTCCCGGCACGCCGCATCACGGTCAACCTCGCGCCCGCCGACCTGCCCAAGGACGGAGGCCGC
TTCGACCTGCCCATCGCGCTGGGCATCCTCGCGGCCAGCGGACAGATCCCGCTGGAGGCGCTGGCCGACGGCGAATTCCT
TGGCGAGCTCGGACTCACGGGCGAACTGCGCGCGGTCGACGGCGTGCTGCCTGCGGCTCTGGCCGCCGGCGATGCGGGGC
GGAAACTGATCGTCCCGGCGGGAAACGGCGCCGAAGCCGCGCTGGCCAGCCGCGTCGAAGTCCGCACGGCGCGCACGTTG
CTGGAAGTCTGCGCGCACCTCACGGGGCGCAAGCCGCTTCCGTTCGCCGAAGCGCCCGCACTTGAACGCACACCCGGACC
GGACCTCGCCGACGTGCGTGGCCAAGCCCAGGCGCGACGCGCGCTGGAGATCGCCGCGGCCGGCGGTCACCACCTTCTTC
TGATCGGCCCGCCCGGTTGCGGCAAGACGTTGCTGGCGTCGCGCCTCCCGGGTCTGTTGCCGGAGGCGACCGAAAGCGAG
GCGCTGGAAGCGGCGGCGATCGCGTCGGTCAGCGGGCGCGGGCTCGATCCGGCGCGTTGGCGCGCGCGGCCCTTTCGATC
GCCGCACCACACCGCCAGTGCGGTCGCGCTGGTCGGCGGTGGCGCGCAGCCGCGGCCGGGCGAGATCTCGCTTGCGCACC
AAGGCGTGCTCTTCCTGGACGAATTGCCCGAATGGGATCGACGCGCGCTGGAAGTCCTGCGCGAACCGTTGGAGTCCGGC
GTCATCACCGTGTCGCGCGCGGCGCGCAGTGCGGAATTTCCGGCGCGATTCCAGCTCGTGGCGGCAATGAATCCCTGCCC
CTGCGGCTGGGCCGGCGACCCGTCCGGACGATGCCGTTGCAGTCCGGACGCAGTGCGACGCTATCGAGGCCGCGTGTCGG
GGCCACTGCTCGATCGCATCGACCTGCATGTCGAAGTCGCGCGCCTACCGCCCGCCGCGCTGCGACCCGACGCGCCTGCC
GGCGAATCCACCGGCACCGTCCGCGCCCGCGTCGTCGAAGCCCGCGCGCGGCAGCATGCGCGGGCGGGCAAGACCAACGC
CGTGCTCGATCAGCCCGAAACCGCGGCCGCTTGCCGGCTCGCCGATGCCGACCGGCTGCTGCTCGAACGCGCCGTGGACG
CCCTGCAGCTGTCGGCGCGCTCGATGCACCGGATCATGCGTGTCGCGCGAACGATCGCCGATCTCGATGACGCGGCCGCC
ATCGGTACGGCCCACCTGACGGAAGCCATTTCGCTACGGCGCGCAACGCGCGGGATCGAAGCCGCGGTGGCGTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(188-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.311

99.008

0.548
  comM Vibrio campbellii strain DS40M4

54.15

100

0.544
  comM Glaesserella parasuis strain SC1401

53.649

100

0.54
  comM Haemophilus influenzae Rd KW20

52.663

100

0.53
  comM Legionella pneumophila str. Paris

50.493

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.493

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.576

100

0.448