Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1776_RS19475 Genome accession   NZ_CP091174
Coordinates   4140036..4141100 (-) Length   354 a.a.
NCBI ID   WP_013981650.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain XX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4135036..4146100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1776_RS19450 aroK 4135594..4136139 (-) 546 WP_017244294.1 shikimate kinase AroK -
  L1776_RS19455 pilQ 4136143..4138263 (-) 2121 WP_236450918.1 type IV pilus secretin PilQ Machinery gene
  L1776_RS19460 pilP 4138317..4138844 (-) 528 WP_014595707.1 type 4a pilus biogenesis lipoprotein PilP -
  L1776_RS19465 pilO 4138841..4139467 (-) 627 WP_020307760.1 type 4a pilus biogenesis protein PilO -
  L1776_RS19470 pilN 4139464..4140036 (-) 573 WP_045159371.1 type 4a pilus biogenesis protein PilN -
  L1776_RS19475 comM 4140036..4141100 (-) 1065 WP_013981650.1 pilus assembly protein PilM Machinery gene
  L1776_RS19480 - 4141280..4143703 (+) 2424 WP_236450919.1 penicillin-binding protein 1A -
  L1776_RS19485 - 4143770..4145038 (-) 1269 WP_236450920.1 malic enzyme-like NAD(P)-binding protein -
  L1776_RS19490 - 4145180..4145974 (-) 795 WP_236450921.1 thermonuclease family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37744.28 Da        Isoelectric Point: 4.6880

>NTDB_id=648173 L1776_RS19475 WP_013981650.1 4140036..4141100(-) (comM) [Stutzerimonas stutzeri strain XX1]
MLGLFTKKANTLLGIDISSTSVKLLELSRSGNRYRVEAYAVEPLPPNAVVEKNIAELEGVGQALQRVVAKAKTGCKSAVV
AVSGSAVITKMIEMDAGLSDEELENQLKIEADQYIPYPLEEVAIDFEVQGPAPRAPGRVEVLLAACRKENVEIREAALAL
AGLTAKVVDVEAYALERSYGLLASQLGTAHGELTVAVVDIGATMTTLSVLHNGRTIYTREQLFGGRQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDSEVLLPFKEAVVQQVSRSLQFFFAAGQFHDVDCILLAGGTASIPGLDHMIQQKIGTQTLVANP
FADMALSGKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=648173 L1776_RS19475 WP_013981650.1 4140036..4141100(-) (comM) [Stutzerimonas stutzeri strain XX1]
GTGCTAGGGCTCTTCACTAAGAAAGCGAACACGCTGCTTGGGATCGATATCAGTTCGACCTCAGTCAAGCTCCTCGAATT
AAGTCGATCGGGTAATCGGTACCGCGTCGAGGCTTATGCCGTCGAGCCGCTACCGCCGAATGCCGTCGTCGAAAAGAACA
TCGCCGAACTTGAGGGTGTCGGTCAGGCCCTGCAGCGAGTCGTTGCCAAGGCCAAGACCGGCTGCAAGTCCGCTGTTGTC
GCTGTCTCCGGGTCTGCCGTCATCACAAAGATGATTGAAATGGATGCCGGGCTTTCTGATGAAGAGCTCGAGAACCAGCT
CAAGATCGAGGCGGATCAGTACATCCCCTACCCACTGGAGGAAGTCGCGATCGACTTCGAGGTGCAAGGTCCTGCGCCTC
GCGCGCCTGGCAGGGTAGAGGTTCTCCTCGCCGCTTGCCGTAAAGAGAATGTCGAGATCCGTGAAGCCGCGCTGGCCTTG
GCCGGGCTTACCGCCAAAGTGGTGGATGTCGAGGCCTATGCGCTTGAACGCTCCTATGGGTTGCTCGCTTCACAGCTGGG
TACAGCGCACGGCGAGCTGACCGTTGCCGTCGTCGACATCGGCGCGACCATGACAACCCTGAGCGTGCTGCATAACGGGC
GTACCATCTACACGCGCGAGCAGCTGTTCGGTGGTCGCCAACTGACCGAAGAGATCCAGCGCCGCTACGGTCTGTCTCAG
GAAGAAGCCGGCCTTGCCAAGAAGCAAGGCGGTCTCCCAGATGACTACGACAGTGAAGTCCTGCTTCCGTTCAAGGAGGC
GGTGGTGCAGCAGGTATCCCGCTCGTTGCAGTTCTTCTTCGCTGCAGGGCAGTTTCACGACGTCGACTGCATCCTGCTCG
CGGGCGGGACGGCCTCCATTCCGGGTCTCGATCACATGATTCAGCAAAAGATCGGAACGCAAACTCTAGTGGCTAATCCC
TTCGCCGATATGGCTTTGAGCGGCAAGGTGAACGCCGGGGCGCTGGCTAGTGATGCGCCTGCATTAATGATTGCATGCGG
TTTGGCGCTGAGGAGCTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

53.39

100

0.534
  pilM Legionella pneumophila strain ERS1305867

46.328

100

0.463