Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   L1776_RS19455 Genome accession   NZ_CP091174
Coordinates   4136143..4138263 (-) Length   706 a.a.
NCBI ID   WP_236450918.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain XX1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4131143..4143263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1776_RS19440 - 4132867..4134456 (-) 1590 WP_236450917.1 AAA family ATPase -
  L1776_RS19445 aroB 4134467..4135570 (-) 1104 WP_019405679.1 3-dehydroquinate synthase -
  L1776_RS19450 aroK 4135594..4136139 (-) 546 WP_017244294.1 shikimate kinase AroK -
  L1776_RS19455 pilQ 4136143..4138263 (-) 2121 WP_236450918.1 type IV pilus secretin PilQ Machinery gene
  L1776_RS19460 pilP 4138317..4138844 (-) 528 WP_014595707.1 type 4a pilus biogenesis lipoprotein PilP -
  L1776_RS19465 pilO 4138841..4139467 (-) 627 WP_020307760.1 type 4a pilus biogenesis protein PilO -
  L1776_RS19470 pilN 4139464..4140036 (-) 573 WP_045159371.1 type 4a pilus biogenesis protein PilN -
  L1776_RS19475 comM 4140036..4141100 (-) 1065 WP_013981650.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 706 a.a.        Molecular weight: 75596.87 Da        Isoelectric Point: 4.8070

>NTDB_id=648172 L1776_RS19455 WP_236450918.1 4136143..4138263(-) (pilQ) [Stutzerimonas stutzeri strain XX1]
MNTTLSRLGVSLLAAFLSPALLAANLNALDVAALPGDRVELKLVFDEPVASPRGYTLDQPARIALDLPGVSNNLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLTALVPYSTRVDGNNLFIVLGESSGTTSPAAASAAVTAPIAKPAPVKPMAAGKAIDN
IDFRRGEDGAGNVVITLSDPSVGSTIEEQGGKIRVVFAKAELPEALRVRLDVQDFATPVKFVDSTAQAGGASIAIEPTGR
YDYLAYQTDNKLTISVKPLTEEEADKRKADRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTSNGGV
VEDRGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVGYDKALGVRWGGNYGKGNWGLYGKDGA
IGVDEDTGRYGTPHTDKVGNFTLKDALAPVPFVDLGVANSTAGIGIGYVSDYGILDLQLSAMEKTGNGEIVSQPKVVTAD
KETAKILKGAEIPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFANALNGVPPINKNEVNAKVLV
TDGETIVIGGVFSNSQISSIEKVPFLGDVPFVGRLFRRDIVEDKKSELLVFLTPRILNYRAVAVGQ

Nucleotide


Download         Length: 2121 bp        

>NTDB_id=648172 L1776_RS19455 WP_236450918.1 4136143..4138263(-) (pilQ) [Stutzerimonas stutzeri strain XX1]
ATGAACACTACCCTTTCTCGCCTGGGCGTATCTCTGCTGGCGGCATTTCTTTCGCCAGCACTGCTGGCGGCCAATCTCAA
CGCCTTGGATGTGGCTGCTTTGCCGGGCGATCGGGTTGAGTTGAAACTGGTATTTGACGAGCCTGTCGCGTCACCTCGTG
GCTACACGCTGGATCAGCCTGCACGCATTGCCCTGGATCTTCCAGGCGTATCCAACAACCTAGGGGCCAAAAACCGGGAG
CTGGGCGTTGGTAATGCGCGCAGCGTAACGGTCGTCGAGGCTCAAGGGCGCACCCGGCTCATCGTCAATCTGACCGCGCT
TGTTCCGTATTCCACTCGAGTGGATGGGAACAATCTGTTTATCGTGCTGGGAGAGAGCTCGGGGACGACCAGCCCTGCGG
CTGCATCCGCCGCGGTCACTGCTCCGATTGCCAAGCCTGCTCCGGTAAAGCCGATGGCGGCCGGCAAGGCGATCGACAAT
ATCGATTTTCGCCGCGGTGAGGATGGTGCCGGAAACGTGGTAATCACACTGTCCGATCCGTCGGTAGGTTCGACTATCGA
AGAGCAGGGAGGAAAGATCCGCGTTGTGTTCGCCAAGGCGGAGCTGCCTGAAGCACTGCGTGTTCGGCTCGACGTCCAGG
ATTTCGCTACGCCGGTGAAGTTTGTCGACTCGACCGCTCAGGCAGGCGGTGCCAGTATCGCCATCGAGCCTACTGGGCGA
TACGATTATCTCGCCTACCAGACAGACAATAAGCTGACCATCAGCGTAAAGCCTCTTACAGAAGAAGAGGCCGATAAGCG
CAAGGCAGACCGTTTCGCCTATTCCGGTGAAAAACTGTCGCTGAACTTCCAGGATATTGATGTCCGTTCCGTACTGCAGT
TGATCGCTGATTTTACTGACCTGAACTTGGTTGCCAGCGATACCGTCAGTGGCAATATCACCCTTCGTTTGCAGAATGTG
CCTTGGGACCAAGCGCTCGACCTGGTTTTGAAAACCAAGGGGCTGGATAAGCGGCAAGTCGGGAACGTGCTGCTCGTTGC
GCCCGCTGACGAAATCGCCGCGCGTGAACGCCAAGAACTCGAGTCGCAGCGCCAGATTGCCGAGCTTGCACCGTTGCGTC
GCGAGGTCGTGCAAGTCAACTATGCCAAAGCTGCGGACATTGCCCGTTTGTTCCAGTCGGTGACAAGTAATGGTGGTGTC
GTGGAAGATCGCGGTTCCATTGCTGTGGACGACCGTACAAACAATATCATCGCCTACCAAACTCAGGAGCGTCTTGACGA
ACTGCGTCGCATCGTCGCTCAGCTCGACATCCCGGTGCGACAGGTAATGATTGAGGCTCGTATCGTTGAAGCGAATGTCG
GATACGATAAGGCGCTCGGGGTCCGTTGGGGGGGTAACTATGGTAAAGGTAACTGGGGTTTGTATGGTAAGGATGGTGCT
ATCGGTGTTGACGAGGATACCGGGCGCTATGGGACGCCGCACACTGATAAGGTTGGTAATTTTACCCTAAAGGATGCATT
AGCTCCGGTTCCGTTTGTTGATCTGGGGGTTGCGAATAGCACCGCGGGGATTGGCATTGGTTACGTATCTGACTACGGTA
TCTTGGATCTTCAGTTGTCCGCGATGGAAAAAACCGGTAACGGTGAAATCGTCTCCCAACCAAAGGTGGTTACTGCGGAT
AAAGAAACGGCCAAGATCTTGAAAGGTGCGGAAATCCCCTACCAAGAAGCCAGTTCGAGTGGCGCAACGTCGACATCTTT
CAAGGAGGCAGCCCTGTCGCTTGAGGTGACGCCGCAGATCACGCCGGACAACCGCATCATTATGGAGGTCAAGGTCACCA
AGGATGCCCCTGATTTTGCTAACGCTCTGAATGGCGTGCCGCCGATCAACAAGAATGAAGTCAACGCCAAAGTTCTTGTT
ACCGACGGAGAAACAATCGTCATCGGTGGTGTATTCTCCAACAGCCAGATCAGCAGCATTGAAAAAGTGCCGTTCCTGGG
TGACGTTCCGTTCGTTGGTCGCCTCTTCCGACGGGACATCGTGGAGGATAAAAAATCCGAGCTTTTGGTCTTCTTGACCC
CTAGAATCCTCAACTACCGAGCGGTCGCCGTGGGCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II and III secretion system protein (Secretin)

(541-697)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

AMIN domain (AMIN)

(40-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.826

100

0.762
  pilQ Acinetobacter baumannii strain A118

39.706

100

0.421
  pilQ Acinetobacter baumannii D1279779

39.706

100

0.421
  comQ Acinetobacter baylyi ADP1

41.414

98.159

0.407