Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1O00_RS20445 Genome accession   NZ_CP091140
Coordinates   4491271..4492785 (+) Length   504 a.a.
NCBI ID   WP_278170044.1    Uniprot ID   -
Organism   Aeromonas veronii strain b1-3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4486271..4497785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1O00_RS20430 (L1O00_20405) - 4488008..4488952 (-) 945 WP_278170038.1 branched-chain amino acid transaminase -
  L1O00_RS20435 (L1O00_20410) ilvM 4488965..4489243 (-) 279 WP_005342011.1 acetolactate synthase 2 small subunit -
  L1O00_RS20440 (L1O00_20415) ilvG 4489240..4490886 (-) 1647 WP_278170041.1 acetolactate synthase 2 catalytic subunit -
  L1O00_RS20445 (L1O00_20420) comM 4491271..4492785 (+) 1515 WP_278170044.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1O00_RS20450 (L1O00_20425) - 4492912..4493811 (+) 900 WP_278170046.1 acyltransferase -
  L1O00_RS20455 (L1O00_20430) - 4493818..4494783 (+) 966 WP_278170047.1 acyltransferase -
  L1O00_RS20460 (L1O00_20435) - 4494708..4495211 (-) 504 WP_278170049.1 DUF523 domain-containing protein -
  L1O00_RS20465 (L1O00_20440) - 4495208..4495858 (-) 651 WP_005339607.1 DNA mismatch repair protein MutT -
  L1O00_RS20470 (L1O00_20445) - 4495933..4496568 (+) 636 WP_278170052.1 nicotinamidase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54662.56 Da        Isoelectric Point: 7.4699

>NTDB_id=647987 L1O00_RS20445 WP_278170044.1 4491271..4492785(+) (comM) [Aeromonas veronii strain b1-3]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRTAHQL
LAVTAWLAGQYELPLPDHQTTDALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLNEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSQQIRDRVLAARERMLSRNGKLNNLLDSREIEDICRLSVQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGQPAI
GKEHLIEALGYRAMDRLLSRLRSS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=647987 L1O00_RS20445 WP_278170044.1 4491271..4492785(+) (comM) [Aeromonas veronii strain b1-3]
ATGTCATTAGCTGTGGTTTATAGCCGTGCCAGCCTCGGGATTGCGGCCCCGCAAGTTACAGTGGAAGTTCACCTATCCAA
CGGCCTGCCCGCCTTCAACATGGTCGGCCTGCCGGAAACCTCGGTGAAAGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAACACATCACAGTCAATCTGGCCCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGCATTCTCGCTGCGTCCAAGCAGATACCGGCAAAATACCTGCTCGATCACGAATTTTT
GGGCGAATTGGCCCTGACTGGCGAGATCCGTCCCGTGCTCGGCGTACTGCCTGCCGTACTCGCCTGCCGGGATGCGGGAC
GTACCCTGCTGGTGCCGCGAGAGAACGGCCCGGAAGCCTCTCTCATTCAGGATGCCGAGGTGCGCACCGCCCACCAGCTG
CTGGCCGTCACCGCCTGGCTGGCAGGCCAGTACGAACTGCCGCTGCCGGATCACCAGACCACGGATGCCCTGCCCGATGT
ACCGGATCTGCAGGATGTGATCGGCCAGTCACAGGCCAAACGGGCGCTGGAGATTGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGTTGGCGAGCCGATTGCCCGGCATTCTGCCACCGCTGAACGAGCAG
GAAGCTCAGCAGACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCACGCGCCGGCCACTGGCACCACAGACCCTATCG
CACGCCCCACCACAGTGCCTCCGCAGTGGCGCTGGTGGGTGGTGGCAGCCACCCAAGGCCCGGCGAAATTTCACTGGCCC
ACAACGGGGTGCTGTTTCTCGACGAGCTGCCCGAATTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAACCACTGGAGACG
GGCCACATCACCATCAGTCGGGCCGCCCGTCAGGTGGATTTTCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGTGACGGCCAGACCCGCTCCAGCCCGGATCAGATCTTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACAGTTGAGGTGCCGCTGCTGCCCAAGGGGAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCCAGCAGATCCGCGATCGGGTGCTGGCGGCGCGAGAGCGCATGCTGAGCCGTAACGGCAAGCTCAACAACCT
GCTGGATAGCCGTGAGATAGAGGATATTTGCCGCTTATCGGTGCAAGATGCCGAATTTTTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCATCGCATCCTGCGGGTGTCACGCACCATCGCCGATCTGGCCGGGCAACCCGCCATC
GGCAAGGAGCATCTTATCGAGGCGCTCGGTTATCGCGCCATGGACAGGCTGCTGTCGCGACTGCGCAGCAGCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.095

100

0.631
  comM Haemophilus influenzae Rd KW20

61.265

100

0.615
  comM Vibrio campbellii strain DS40M4

61.753

99.603

0.615
  comM Glaesserella parasuis strain SC1401

60.158

100

0.605
  comM Legionella pneumophila str. Paris

50.595

100

0.506
  comM Legionella pneumophila strain ERS1305867

50.595

100

0.506
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.063

100

0.464