Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L2D51_RS23230 Genome accession   NZ_CP091122
Coordinates   4859745..4861268 (+) Length   507 a.a.
NCBI ID   WP_079452495.1    Uniprot ID   -
Organism   Serratia marcescens strain CM2012_028     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4854745..4866268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2D51_RS23205 (L2D51_23205) - 4854946..4855872 (-) 927 WP_016930475.1 branched-chain amino acid transaminase -
  L2D51_RS23210 (L2D51_23210) ilvM 4855896..4856153 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  L2D51_RS23215 (L2D51_23215) ilvG 4856150..4857796 (-) 1647 WP_033639153.1 acetolactate synthase 2 catalytic subunit -
  L2D51_RS23220 (L2D51_23220) ilvL 4857939..4858037 (-) 99 WP_013814970.1 ilv operon leader peptide -
  L2D51_RS23225 (L2D51_23225) - 4858171..4859403 (-) 1233 WP_004929950.1 MFS transporter -
  L2D51_RS23230 (L2D51_23230) comM 4859745..4861268 (+) 1524 WP_079452495.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L2D51_RS23235 (L2D51_23235) - 4861296..4861634 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  L2D51_RS23240 (L2D51_23240) hdfR 4861754..4862581 (+) 828 WP_028128092.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54513.73 Da        Isoelectric Point: 7.6226

>NTDB_id=647883 L2D51_RS23230 WP_079452495.1 4859745..4861268(+) (comM) [Serratia marcescens strain CM2012_028]
MSLALIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGSLRAVRGAIPAALAAADAGRQLILSTDNAAEVGLIAQSRSHTAQHL
LEVCAFLLGQGELPVAATPPDADNACENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
AEALESLAIASLQHHIPAALLWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNTLGLSVRAWQRILKVARTLADLAGDAE
LDRRHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=647883 L2D51_RS23230 WP_079452495.1 4859745..4861268(+) (comM) [Serratia marcescens strain CM2012_028]
ATGTCACTGGCGTTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAGCGGTTTCACCTTTCCCGCCCGGCGCATCACCGTCAATTTGGCGCCCGCCGATCTGCCAAAAGAAGGCGGGCGT
TACGATCTGCCGATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCGCCGTTGGCGCGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCTGGCTCACTGCGCGCGGTCAGGGGAGCGATCCCGGCGGCACTGGCGGCGGCTGATGCCGGGC
GGCAACTGATCCTCTCGACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCGCTCCCATACCGCCCAACACCTG
CTGGAAGTCTGCGCTTTTTTGCTGGGCCAAGGCGAACTGCCGGTGGCGGCCACGCCCCCCGATGCGGACAACGCGTGCGA
AAACGCCGACCTGCGCGACATCATCGGTCAGGAACAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGTTGATTGGGCCACCGGGCACCGGTAAAACCATGCTGGCCAGCCGTCTCACGGGCTTGCTACCGCCGCTGACGGAG
GCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAGCATCACATTCCCGCCGCGCTACTATGGCGCCAGAGGCCGTT
TCGCGCGCCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGCGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCATTGGAA
TCCGGCGAGATCGTGATTTCGCGTGCCAACGCCAAGGTCTGTTTCCCCGCCAGGGTGCAACTGATCGCGGCAATGAACCC
CAGTCCGACAGGGCATTATCAGGGGTTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTGCCGTTGTTGCCGCCGGGTACGCTCAGTCATCGGAAAACCCAT
GGAGAAAGCAGCGAACAAGTACGGAAAAGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGTGAAGTGGAACGAGATTGCGTTTTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACA
CGCTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAG
CTCGACAGGCGTCACCTCAGCGAAGCGCTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGCAGCCTGGA
ATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

66.135

99.014

0.655
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

51.406

98.225

0.505
  comM Legionella pneumophila strain ERS1305867

51.406

98.225

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.454