Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L2D49_RS23700 Genome accession   NZ_CP091121
Coordinates   4988850..4990373 (+) Length   507 a.a.
NCBI ID   WP_240290115.1    Uniprot ID   -
Organism   Serratia ureilytica strain CM2016_324     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 4983850..4995373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L2D49_RS23675 (L2D49_23675) - 4984051..4984977 (-) 927 WP_033645378.1 branched-chain amino acid transaminase -
  L2D49_RS23680 (L2D49_23680) ilvM 4985001..4985258 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  L2D49_RS23685 (L2D49_23685) ilvG 4985255..4986901 (-) 1647 WP_197850211.1 acetolactate synthase 2 catalytic subunit -
  L2D49_RS23690 (L2D49_23690) ilvL 4987044..4987142 (-) 99 WP_013814970.1 ilv operon leader peptide -
  L2D49_RS23695 (L2D49_23695) - 4987276..4988508 (-) 1233 WP_033645380.1 MFS transporter -
  L2D49_RS23700 (L2D49_23700) comM 4988850..4990373 (+) 1524 WP_240290115.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L2D49_RS23705 (L2D49_23705) - 4990402..4990740 (-) 339 WP_004929946.1 DUF413 domain-containing protein -
  L2D49_RS23710 (L2D49_23710) hdfR 4990860..4991687 (+) 828 WP_033645382.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54510.79 Da        Isoelectric Point: 7.9483

>NTDB_id=647860 L2D49_RS23700 WP_240290115.1 4988850..4990373(+) (comM) [Serratia ureilytica strain CM2016_324]
MSLAVIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINNGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADAGRQLVLSTDNAAEVGLIAQSQSHTAQHL
LEVCAFLLGQGELPVAVTPPAADNPHEKADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
PEALESLAVASLQHPVLTALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISLAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPAKVQLIAAMNPSPTGHYQGMHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSKRQTQ
GESSEQVRERVRQARTRQLERAGKINALLNNREVERDCVLQAADAEFLEATLNALGLSVRAWQRILKVARTLADLAGDAE
IGRRHLSEALSYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=647860 L2D49_RS23700 WP_240290115.1 4988850..4990373(+) (comM) [Serratia ureilytica strain CM2016_324]
ATGTCACTGGCGGTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTAACGGTAGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTTGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAACGGTTTCACCTTTCCCGCCCGCCGCATCACCGTCAATTTGGCGCCGGCCGATCTGCCGAAAGAAGGCGGGCGC
TACGATCTGCCGATTGCGCTGGCGATCCTCGCCGCCTCCGAGCAACTGCCCCTCGCCCCGTTGGCACGCTACGAGTTTCT
TGGCGAACTGGCGCTGTCCGGCGCGCTGCGCGCGGTCAGAGGCGCCATCCCGGCGGCGCTGGCGGCGGCTGACGCCGGGC
GACAATTGGTCCTCTCCACGGACAACGCCGCCGAGGTCGGCCTGATCGCGCAGTCACAATCCCATACTGCCCAACACCTG
TTGGAGGTCTGTGCCTTTTTGCTCGGTCAGGGCGAGCTGCCGGTGGCCGTCACGCCTCCCGCGGCAGACAACCCGCATGA
AAAAGCCGATCTGCGCGACATCATCGGCCAAGAGCAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGCTGATTGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCAGCCGACTGACTGGCTTACTGCCGCCGCTGACGGAA
CCTGAGGCGCTGGAAAGCCTGGCGGTCGCCAGCTTGCAGCATCCTGTTCTCACCGCTTTGCCATGGCGCCAGAGGCCATT
TCGCGCACCGCATCACAGCGCATCGATGGCGGCGTTGGTCGGCGGCGGCTCACTGCCGCGCCCGGGTGAGATATCTTTGG
CGCATAACGGCGTGCTGTTTCTGGATGAGCTGCCGGAATTCGAGCGTAAGGTGCTGGATGCGCTGCGTGAACCGCTGGAA
TCCGGCGAGATCGTGATTTCACGTGCCAACGCCAAGGTCTGCTTCCCAGCCAAGGTGCAATTGATCGCGGCGATGAATCC
CAGCCCAACCGGGCATTACCAGGGCATGCATAATCGCGCCTCGCCGCAGCAGGTGCTGCGCTACCTGGCCCGGCTGTCAG
GGCCTTTTCTCGATCGTTTCGATCTGTCTATCGAAGTGCCGCTGTTACCTCCAGGCACGCTCAGTAAGCGGCAAACTCAG
GGAGAAAGCAGCGAGCAGGTGCGGGAAAGAGTGCGACAGGCACGCACCCGGCAGCTCGAACGCGCCGGTAAAATCAACGC
GCTGTTAAACAACCGTGAAGTGGAACGGGATTGCGTGTTGCAGGCGGCAGACGCCGAGTTTTTGGAAGCGACATTAAACG
CGTTGGGGTTATCGGTCCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGGGATGCCGAG
ATCGGCAGGCGCCACCTCAGCGAAGCGCTGAGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGTAGTCTGGA
ATAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

66.798

99.803

0.667
  comM Glaesserella parasuis strain SC1401

66.469

100

0.665
  comM Vibrio cholerae strain A1552

65.538

99.014

0.649
  comM Vibrio campbellii strain DS40M4

64.94

99.014

0.643
  comM Legionella pneumophila str. Paris

51.703

98.422

0.509
  comM Legionella pneumophila strain ERS1305867

51.703

98.422

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.58

100

0.458