Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   SCAZ3_RS05050 Genome accession   NZ_AIDX01000001
Coordinates   1071594..1072505 (+) Length   303 a.a.
NCBI ID   WP_003046007.1    Uniprot ID   A0AAE4Q9F2
Organism   Streptococcus canis FSL Z3-227     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1066594..1077505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SCAZ3_RS05035 (SCAZ3_00450) purE 1068099..1068590 (+) 492 WP_003046002.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  SCAZ3_RS05040 (SCAZ3_00455) purK 1068577..1069647 (+) 1071 WP_003046003.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  SCAZ3_RS05045 (SCAZ3_00460) purB 1070165..1071457 (+) 1293 WP_003046005.1 adenylosuccinate lyase -
  SCAZ3_RS05050 (SCAZ3_00465) comR 1071594..1072505 (+) 912 WP_003046007.1 helix-turn-helix domain-containing protein Regulator
  SCAZ3_RS12085 (SCAZ3_00470) comS 1072595..1072690 (+) 96 WP_201281440.1 quorum-sensing system DWW-type pheromone Regulator
  SCAZ3_RS05055 (SCAZ3_00475) ruvB 1072726..1073724 (+) 999 WP_003046011.1 Holliday junction branch migration DNA helicase RuvB -
  SCAZ3_RS05060 (SCAZ3_00480) - 1073865..1074308 (+) 444 WP_003046014.1 low molecular weight protein-tyrosine-phosphatase -
  SCAZ3_RS05065 (SCAZ3_00485) - 1074325..1074726 (+) 402 WP_003046016.1 MORN repeat-containing protein -
  SCAZ3_RS05070 (SCAZ3_00490) - 1074723..1076498 (+) 1776 WP_003046018.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 303 a.a.        Molecular weight: 36092.66 Da        Isoelectric Point: 5.0503

>NTDB_id=64774 SCAZ3_RS05050 WP_003046007.1 1071594..1072505(+) (comR) [Streptococcus canis FSL Z3-227]
MLEHFGEKVKGLRQEKKISREDLCGDESELSVRQLARIELSQSIPSLAKVIFIAKALDVSVGYLTDGANLELPKRYKELK
YLILRTPTYMDDGKLQVREEQFDEIFEDYYDQLPEEEQVAIDIIQAKFEVYQTGNINFGSSILKEFLPQLKRKVIYNLNE
LLLIDLYLVTLVVSHFADDLFDRELYNKITERILKQNHHLMLEDLFLLNNILLSCADTSIRLEMFGRLKETLQLSHFIMS
TIQDFQRMPIYCMYEWKLSIFYLKDVERARNYYEQSILFTQMTSDYYLVERLHKEWHKDIQHI

Nucleotide


Download         Length: 912 bp        

>NTDB_id=64774 SCAZ3_RS05050 WP_003046007.1 1071594..1072505(+) (comR) [Streptococcus canis FSL Z3-227]
ATGTTAGAGCATTTTGGTGAAAAAGTGAAAGGGCTAAGACAAGAGAAAAAGATTAGCAGAGAAGACTTATGTGGGGATGA
GTCTGAATTATCTGTTCGTCAACTAGCGAGGATTGAGTTGAGCCAGTCTATACCAAGTTTAGCCAAGGTTATTTTTATTG
CAAAAGCCTTAGATGTTAGCGTAGGTTATTTGACTGATGGGGCCAACCTTGAGTTACCCAAACGTTACAAAGAGTTAAAA
TATTTAATTCTGCGGACGCCAACTTATATGGATGATGGCAAATTACAAGTTCGAGAAGAACAGTTTGATGAGATATTTGA
GGATTACTATGACCAGCTGCCTGAGGAGGAGCAGGTGGCTATTGATATTATTCAAGCAAAATTTGAAGTTTACCAAACTG
GGAATATTAATTTTGGATCTAGTATTTTAAAAGAATTTTTACCACAACTTAAAAGGAAAGTTATTTATAATTTAAATGAG
TTGCTTTTGATAGATTTGTATTTAGTTACTTTGGTGGTTTCCCATTTTGCAGATGATTTATTTGACAGAGAGCTTTATAA
TAAGATTACAGAAAGAATTTTAAAACAAAACCATCATTTAATGTTGGAAGATTTATTTCTGCTGAATAATATTTTATTGT
CTTGTGCAGATACCTCTATTCGTTTAGAAATGTTTGGGAGGCTAAAAGAGACGTTACAACTCAGTCATTTCATTATGTCA
ACTATTCAAGATTTTCAAAGAATGCCAATTTATTGTATGTATGAGTGGAAGTTATCTATCTTTTATTTAAAAGATGTTGA
ACGTGCTCGAAATTATTATGAACAATCTATTTTATTTACTCAAATGACTAGTGATTATTACCTGGTTGAGAGACTTCACA
AAGAATGGCATAAAGATATTCAACATATATAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(12-64)

ComR tetratricopeptide (ComR_TPR)

(73-296)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus pyogenes MGAS315

84.818

100

0.848
  comR Streptococcus pyogenes MGAS8232

55.629

99.67

0.554
  comR Streptococcus mutans UA159

48.344

99.67

0.482
  comR Streptococcus infantarius subsp. infantarius ATCC BAA-102

44.746

97.36

0.436

Multiple sequence alignment