Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1S45_RS00675 Genome accession   NZ_CP091091
Coordinates   149176..150690 (-) Length   504 a.a.
NCBI ID   WP_252603016.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain b2-100     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 144176..155690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1S45_RS00650 (L1S45_00650) - 145306..145941 (-) 636 WP_017764914.1 nicotinamidase -
  L1S45_RS00655 (L1S45_00655) - 146017..146667 (+) 651 WP_005306829.1 DNA mismatch repair protein MutT -
  L1S45_RS00660 (L1S45_00660) - 146768..147253 (+) 486 WP_201970981.1 DUF523 domain-containing protein -
  L1S45_RS00665 (L1S45_00665) - 147199..148152 (-) 954 WP_026141557.1 acyltransferase -
  L1S45_RS00670 (L1S45_00670) - 148146..149060 (-) 915 WP_017787026.1 acyltransferase -
  L1S45_RS00675 (L1S45_00675) comM 149176..150690 (-) 1515 WP_252603016.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1S45_RS00680 (L1S45_00680) ilvG 151075..152736 (+) 1662 WP_252603019.1 acetolactate synthase 2 catalytic subunit -
  L1S45_RS00685 (L1S45_00685) ilvM 152733..152984 (+) 252 WP_005306810.1 acetolactate synthase 2 small subunit -
  L1S45_RS00690 (L1S45_00690) - 152997..153941 (+) 945 WP_017781281.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54655.58 Da        Isoelectric Point: 7.3080

>NTDB_id=647589 L1S45_RS00675 WP_252603016.1 149176..150690(-) (comM) [Aeromonas dhakensis strain b2-100]
MSLAVVYSRASLGIAAPQVTVEVHLSNGLPAFNMVGLPETSVKESRDRVRSALLNGNFEFPSKHITVNLAPADLPKEGGR
FDLAIAIGILAASKQIPAKYLLDHEFLGELALTGEIRPVLGVLPAVLACRDAGRTLLVPRENGPEASLIQDAEVRIAHQL
LAVTAWLAGQYELPLPDHQTTEALPDVPDLQDVIGQSQAKRALEIAAAGSHNLLFIGPPGTGKSMLASRLPGILPPLSEQ
EAQQTAAIHSIGGLTPRAGHWHHRPYRTPHHSASAVALVGGGSHPRPGEISLAHNGVLFLDELPEFERKVLDSLREPLET
GHITISRAARQVDFPARFQLVGAMNPSPCGHYGDGQTRSSPDQILRYLGKLSGPFLDRFDLTVEVPLLPKGSLTGKAERG
ESSGQIRERVLGARERMLSRNGKLNNLLDSREIEEICRLSPQDAEFLENAIQKLGLSIRAWHRILRVSRTIADLAGHAAI
EREHLIEALGYRAMDRLLSRLRSG

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=647589 L1S45_RS00675 WP_252603016.1 149176..150690(-) (comM) [Aeromonas dhakensis strain b2-100]
ATGTCTTTAGCTGTGGTTTATAGCCGTGCCAGCCTGGGAATAGCGGCCCCGCAAGTCACGGTGGAAGTGCACCTCTCCAA
CGGTCTGCCTGCCTTCAACATGGTGGGCCTGCCGGAAACCTCGGTGAAGGAGTCGCGGGATCGGGTGCGCAGCGCCCTGC
TCAACGGCAATTTCGAGTTCCCGAGCAAGCACATCACGGTCAATCTGGCTCCCGCCGATCTGCCCAAGGAGGGGGGCCGT
TTCGATCTGGCCATCGCCATCGGTATTCTCGCCGCTTCCAAGCAGATACCCGCAAAATACCTGCTTGATCACGAATTTTT
AGGCGAGCTGGCCCTGACCGGCGAGATCCGCCCCGTGCTCGGGGTGCTGCCCGCCGTGCTCGCCTGCCGGGATGCGGGGC
GTACCCTGCTGGTACCGCGAGAGAACGGCCCCGAGGCCTCGCTGATCCAGGACGCCGAGGTGCGCATCGCCCATCAGCTG
CTGGCCGTCACCGCCTGGCTGGCGGGCCAGTACGAACTGCCACTGCCGGATCACCAGACCACGGAGGCCCTGCCCGATGT
GCCGGATCTGCAGGATGTGATCGGCCAATCCCAGGCCAAACGGGCGCTGGAGATCGCCGCCGCCGGCAGCCACAACCTGC
TGTTCATCGGCCCGCCCGGCACCGGCAAGAGCATGCTGGCGAGTCGCTTGCCCGGCATTCTGCCACCGCTGAGCGAACAG
GAGGCGCAGCAAACCGCCGCCATCCACTCCATCGGCGGCCTCACCCCGCGCGCCGGTCACTGGCATCACAGACCCTATCG
CACGCCGCACCACAGCGCCTCGGCCGTGGCACTGGTGGGCGGTGGCAGCCACCCAAGGCCCGGCGAAATATCCCTGGCCC
ACAACGGGGTGCTGTTTCTGGATGAACTGCCGGAGTTCGAGCGCAAGGTGCTCGACTCCCTGCGCGAGCCGCTGGAGACC
GGCCACATCACCATCAGCCGGGCCGCCCGCCAGGTCGATTTCCCCGCTCGCTTCCAGCTGGTCGGCGCCATGAACCCCAG
CCCCTGCGGCCACTATGGCGATGGCCAGACCCGCTCCAGCCCGGATCAGATCCTGCGCTACCTCGGCAAGCTCTCCGGCC
CCTTTCTCGACCGCTTCGACCTGACGGTGGAGGTGCCGCTGCTGCCCAAGGGCAGCCTGACCGGCAAGGCGGAGCGGGGG
GAGTCGAGCGGTCAGATCCGCGAACGGGTGCTGGGCGCGCGGGAGCGCATGCTGAGCCGTAACGGCAAACTCAACAACCT
GCTTGATAGCCGCGAAATAGAAGAAATTTGCCGCTTATCGCCGCAAGATGCCGAGTTTCTGGAGAACGCCATCCAGAAGC
TGGGGCTCAGCATCCGGGCCTGGCACCGCATCCTGCGGGTATCGCGCACCATCGCCGATCTGGCGGGGCACGCCGCCATC
GAAAGAGAGCACCTGATCGAGGCGCTCGGCTATCGGGCCATGGATCGGCTGCTGTCACGGCTGCGCAGCGGTTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-390)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

63.546

99.603

0.633
  comM Vibrio campbellii strain DS40M4

62.5

100

0.625
  comM Haemophilus influenzae Rd KW20

61.66

100

0.619
  comM Glaesserella parasuis strain SC1401

60.355

100

0.607
  comM Legionella pneumophila str. Paris

50.794

100

0.508
  comM Legionella pneumophila strain ERS1305867

50.794

100

0.508
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.443

100

0.466