Detailed information
Bioinformatically predicted
Overview
| Name | comM | Type | Machinery gene |
| Locus tag | L1O02_RS00940 | Genome accession | NZ_CP091067 |
| Coordinates | 203731..205224 (-) | Length | 497 a.a. |
| NCBI ID | WP_060844952.1 | Uniprot ID | A0AAD1BFQ0 |
| Organism | Pseudomonas sp. BC42 | ||
| Function | DNA uptake (predicted from homology) DNA binding and uptake |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 164013..213028 | 203731..205224 | within | 0 |
Gene organization within MGE regions
Location: 164013..213028
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L1O02_RS00755 (L1O02_00755) | rph | 164939..165661 (+) | 723 | WP_016964145.1 | ribonuclease PH | - |
| L1O02_RS00760 (L1O02_00760) | - | 165692..166060 (+) | 369 | WP_016964144.1 | DUF4870 domain-containing protein | - |
| L1O02_RS00765 (L1O02_00765) | - | 166123..166902 (-) | 780 | WP_011064227.1 | exodeoxyribonuclease III | - |
| L1O02_RS00770 (L1O02_00770) | pyrE | 166984..167628 (+) | 645 | WP_108545009.1 | orotate phosphoribosyltransferase | - |
| L1O02_RS00775 (L1O02_00775) | argB | 167716..168621 (-) | 906 | WP_011064225.1 | acetylglutamate kinase | - |
| L1O02_RS00780 (L1O02_00780) | - | 168646..170046 (-) | 1401 | Protein_155 | phosphomannomutase/phosphoglucomutase | - |
| L1O02_RS00785 (L1O02_00785) | dut | 170308..170763 (-) | 456 | WP_060841716.1 | dUTP diphosphatase | - |
| L1O02_RS00790 (L1O02_00790) | coaBC | 170769..171977 (-) | 1209 | WP_060841715.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| L1O02_RS00795 (L1O02_00795) | radC | 172110..172784 (+) | 675 | WP_060841714.1 | DNA repair protein RadC | - |
| L1O02_RS00800 (L1O02_00800) | - | 172833..174416 (-) | 1584 | WP_060844960.1 | ABC transporter substrate-binding protein | - |
| L1O02_RS00805 (L1O02_00805) | rpmB | 174893..175129 (+) | 237 | WP_011064219.1 | 50S ribosomal protein L28 | - |
| L1O02_RS00810 (L1O02_00810) | rpmG | 175141..175296 (+) | 156 | WP_003177274.1 | 50S ribosomal protein L33 | - |
| L1O02_RS00815 (L1O02_00815) | - | 175355..175717 (-) | 363 | WP_060841712.1 | cupin domain-containing protein | - |
| L1O02_RS00820 (L1O02_00820) | - | 175956..177449 (+) | 1494 | WP_060841711.1 | aldehyde dehydrogenase | - |
| L1O02_RS00825 (L1O02_00825) | - | 177613..178761 (+) | 1149 | WP_060841710.1 | MFS transporter | - |
| L1O02_RS00830 (L1O02_00830) | - | 178796..179209 (+) | 414 | WP_146189191.1 | hypothetical protein | - |
| L1O02_RS00835 (L1O02_00835) | - | 179225..180790 (-) | 1566 | WP_060844958.1 | phospholipase D family protein | - |
| L1O02_RS00840 (L1O02_00840) | - | 180857..182281 (-) | 1425 | WP_060841707.1 | PLP-dependent aminotransferase family protein | - |
| L1O02_RS00845 (L1O02_00845) | - | 182462..182704 (+) | 243 | WP_108545011.1 | DUF1127 domain-containing protein | - |
| L1O02_RS00850 (L1O02_00850) | - | 182732..184024 (-) | 1293 | WP_235759426.1 | FAD-binding oxidoreductase | - |
| L1O02_RS00855 (L1O02_00855) | - | 184173..184526 (+) | 354 | WP_060841704.1 | YkgJ family cysteine cluster protein | - |
| L1O02_RS00860 (L1O02_00860) | - | 184584..185072 (-) | 489 | WP_011064210.1 | Lrp/AsnC ligand binding domain-containing protein | - |
| L1O02_RS00865 (L1O02_00865) | dadA | 185230..186531 (+) | 1302 | WP_060841703.1 | D-amino acid dehydrogenase | - |
| L1O02_RS00870 (L1O02_00870) | - | 186503..186856 (+) | 354 | WP_060841702.1 | RidA family protein | - |
| L1O02_RS00875 (L1O02_00875) | alr | 186949..188022 (+) | 1074 | WP_060841701.1 | alanine racemase | - |
| L1O02_RS00880 (L1O02_00880) | - | 188155..188703 (+) | 549 | WP_015637462.1 | cupin domain-containing protein | - |
| L1O02_RS00885 (L1O02_00885) | - | 188885..189301 (+) | 417 | WP_011064205.1 | c-type cytochrome | - |
| L1O02_RS00890 (L1O02_00890) | - | 189438..191369 (+) | 1932 | WP_108545013.1 | acetyl-CoA hydrolase/transferase C-terminal domain-containing protein | - |
| L1O02_RS00895 (L1O02_00895) | - | 191483..192055 (-) | 573 | WP_016968070.1 | xanthine phosphoribosyltransferase | - |
| L1O02_RS00900 (L1O02_00900) | rep | 192111..194120 (-) | 2010 | WP_060841699.1 | DNA helicase Rep | - |
| L1O02_RS00905 (L1O02_00905) | - | 194388..196061 (+) | 1674 | WP_060841698.1 | bifunctional diguanylate cyclase/phosphodiesterase | - |
| L1O02_RS00910 (L1O02_00910) | - | 196103..197503 (-) | 1401 | WP_181321592.1 | NorM family multidrug efflux MATE transporter | - |
| L1O02_RS00915 (L1O02_00915) | - | 197663..198583 (+) | 921 | WP_060841696.1 | LysR substrate-binding domain-containing protein | - |
| L1O02_RS00920 (L1O02_00920) | - | 198777..200753 (+) | 1977 | WP_108545015.1 | methyl-accepting chemotaxis protein | - |
| L1O02_RS00925 (L1O02_00925) | - | 200780..201793 (-) | 1014 | WP_108545016.1 | ABC transporter six-transmembrane domain-containing protein | - |
| L1O02_RS00930 (L1O02_00930) | - | 201820..202398 (+) | 579 | WP_060844953.1 | TetR/AcrR family transcriptional regulator | - |
| L1O02_RS00935 (L1O02_00935) | - | 202512..203726 (+) | 1215 | WP_060841692.1 | aldose 1-epimerase family protein | - |
| L1O02_RS00940 (L1O02_00940) | comM | 203731..205224 (-) | 1494 | WP_060844952.1 | YifB family Mg chelatase-like AAA ATPase | Machinery gene |
| L1O02_RS00945 (L1O02_00945) | - | 205414..205674 (-) | 261 | WP_016965457.1 | accessory factor UbiK family protein | - |
| L1O02_RS00950 (L1O02_00950) | glnK | 206090..206428 (+) | 339 | WP_002555808.1 | P-II family nitrogen regulator | - |
| L1O02_RS00955 (L1O02_00955) | - | 206462..207799 (+) | 1338 | WP_235759428.1 | ammonium transporter | - |
| L1O02_RS00960 (L1O02_00960) | - | 208010..208435 (+) | 426 | WP_060841688.1 | secondary thiamine-phosphate synthase enzyme YjbQ | - |
| L1O02_RS00965 (L1O02_00965) | sutA | 208538..208861 (+) | 324 | WP_016965454.1 | transcriptional regulator SutA | - |
| L1O02_RS00970 (L1O02_00970) | - | 208990..209685 (-) | 696 | WP_060841687.1 | HAD family hydrolase | - |
| L1O02_RS00975 (L1O02_00975) | xerC | 209685..210581 (-) | 897 | WP_235759430.1 | tyrosine recombinase XerC | - |
| L1O02_RS00980 (L1O02_00980) | - | 210584..211309 (-) | 726 | WP_060844951.1 | DUF484 family protein | - |
| L1O02_RS00985 (L1O02_00985) | dapF | 211323..212153 (-) | 831 | WP_047306595.1 | diaminopimelate epimerase | - |
Sequence
Protein
Download Length: 497 a.a. Molecular weight: 53089.90 Da Isoelectric Point: 7.9238
>NTDB_id=647465 L1O02_RS00940 WP_060844952.1 203731..205224(-) (comM) [Pseudomonas sp. BC42]
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPAQALDNIECLGELALSGAVRAVRGVLPAALAARDAGRTLLVPRANAEEACLASGLEVIAVEHL
LQAVAHLNGQAPIAPYISDGLTQSHSPYPDLREVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVTSHTPLRHWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIIISRARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALNPRPQP
GNDSAEAAARVARARQLQGQRQGCANAFLDLPGLRRHCQLSTADEHWLEAACERLNLSLRAAHRLLKVARTLADLEQAAS
ISRDHLAEALHYRPGAD
MSLAIIHSRAQVGVQAPAVSVEVHLANGLPSLTLVGLPEAAVKESKDRVRSAILNAGFDFPARRITLNLAPADLPKDGGR
FDLAIALGILAASVQVPAQALDNIECLGELALSGAVRAVRGVLPAALAARDAGRTLLVPRANAEEACLASGLEVIAVEHL
LQAVAHLNGQAPIAPYISDGLTQSHSPYPDLREVQGQLAAKRALLIAAAGAHNLLFSGPPGTGKTLLASRLPGLLPPLQE
DEALEVAAIQSVTSHTPLRHWPQRPFRQPHHSASGAALVGGGSKPQPGEITLAHHGVLFLDELPEFDRKVLEVLREPMES
GQIIISRARDRVQFPARFQLVAAMNPCPCGYLGEPSGRCRCTPEQIQRYRNKLSGPLLDRIDLHLTVAREVTALNPRPQP
GNDSAEAAARVARARQLQGQRQGCANAFLDLPGLRRHCQLSTADEHWLEAACERLNLSLRAAHRLLKVARTLADLEQAAS
ISRDHLAEALHYRPGAD
Nucleotide
Download Length: 1494 bp
>NTDB_id=647465 L1O02_RS00940 WP_060844952.1 203731..205224(-) (comM) [Pseudomonas sp. BC42]
ATGTCCCTGGCGATCATTCACAGCCGTGCCCAGGTCGGCGTGCAGGCACCGGCGGTCAGCGTTGAAGTGCACCTGGCCAA
TGGCTTGCCAAGCCTGACCCTGGTGGGCCTGCCGGAAGCTGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAACGCCGGGTTCGATTTCCCCGCGCGCCGCATCACCCTCAACCTGGCTCCGGCGGACCTGCCCAAGGATGGCGGGCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAAGTACCGGCGCAGGCCCTGGACAACATCGAATGCCT
GGGGGAACTGGCGCTGTCCGGAGCAGTAAGGGCGGTGCGCGGCGTACTCCCTGCCGCACTGGCGGCGCGCGACGCCGGAC
GCACCCTGCTGGTGCCCCGCGCCAATGCCGAAGAAGCCTGCCTGGCCAGTGGCCTGGAGGTGATCGCGGTCGAGCATCTG
CTGCAAGCCGTGGCCCATCTCAACGGCCAGGCACCGATAGCGCCTTACATCAGCGACGGCCTGACACAGAGCCACTCCCC
CTACCCCGATCTTCGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCCTTGCTGATCGCCGCGGCCGGTGCCCACAACC
TGCTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCCCCCTTGCAGGAG
GACGAGGCCCTGGAAGTGGCGGCGATTCAATCGGTGACCAGCCACACGCCCCTGCGCCACTGGCCCCAGCGGCCGTTTCG
TCAGCCTCATCATTCGGCTTCGGGGGCGGCGCTGGTCGGAGGCGGCTCCAAACCCCAACCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTACCGGAGTTCGATCGCAAGGTATTGGAGGTCCTGCGCGAGCCCATGGAGTCC
GGGCAGATCATCATCTCCCGGGCCCGCGACCGGGTGCAGTTCCCGGCACGCTTCCAACTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGATACCTTGGCGAACCCAGCGGACGCTGCCGCTGCACGCCGGAACAGATCCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAGGTCACCGCCCTCAACCCCAGGCCACAACCG
GGCAACGACAGCGCCGAAGCCGCCGCCAGAGTCGCCCGGGCACGCCAGCTGCAAGGCCAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGGCGCCATTGCCAGTTATCCACAGCCGACGAGCACTGGCTGGAAGCGGCCTGCGAAC
GCTTGAACCTGTCGTTGCGCGCCGCTCACCGCCTGCTCAAGGTGGCCAGGACCCTGGCCGACCTGGAGCAGGCGGCAAGC
ATCAGTCGCGACCATCTGGCAGAGGCGCTGCACTATCGTCCCGGCGCCGATTGA
ATGTCCCTGGCGATCATTCACAGCCGTGCCCAGGTCGGCGTGCAGGCACCGGCGGTCAGCGTTGAAGTGCACCTGGCCAA
TGGCTTGCCAAGCCTGACCCTGGTGGGCCTGCCGGAAGCTGCAGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATTC
TCAACGCCGGGTTCGATTTCCCCGCGCGCCGCATCACCCTCAACCTGGCTCCGGCGGACCTGCCCAAGGATGGCGGGCGC
TTCGACCTGGCCATCGCCCTGGGCATCCTCGCCGCCAGCGTGCAAGTACCGGCGCAGGCCCTGGACAACATCGAATGCCT
GGGGGAACTGGCGCTGTCCGGAGCAGTAAGGGCGGTGCGCGGCGTACTCCCTGCCGCACTGGCGGCGCGCGACGCCGGAC
GCACCCTGCTGGTGCCCCGCGCCAATGCCGAAGAAGCCTGCCTGGCCAGTGGCCTGGAGGTGATCGCGGTCGAGCATCTG
CTGCAAGCCGTGGCCCATCTCAACGGCCAGGCACCGATAGCGCCTTACATCAGCGACGGCCTGACACAGAGCCACTCCCC
CTACCCCGATCTTCGCGAAGTACAGGGCCAGCTCGCCGCCAAGCGCGCCTTGCTGATCGCCGCGGCCGGTGCCCACAACC
TGCTGTTCAGCGGCCCGCCAGGCACCGGCAAGACCCTGCTGGCCAGCCGCCTGCCCGGCCTGTTGCCCCCCTTGCAGGAG
GACGAGGCCCTGGAAGTGGCGGCGATTCAATCGGTGACCAGCCACACGCCCCTGCGCCACTGGCCCCAGCGGCCGTTTCG
TCAGCCTCATCATTCGGCTTCGGGGGCGGCGCTGGTCGGAGGCGGCTCCAAACCCCAACCCGGGGAAATCACCCTGGCCC
ATCACGGCGTGCTGTTTCTCGATGAGCTACCGGAGTTCGATCGCAAGGTATTGGAGGTCCTGCGCGAGCCCATGGAGTCC
GGGCAGATCATCATCTCCCGGGCCCGCGACCGGGTGCAGTTCCCGGCACGCTTCCAACTGGTCGCGGCGATGAACCCCTG
CCCCTGCGGATACCTTGGCGAACCCAGCGGACGCTGCCGCTGCACGCCGGAACAGATCCAGCGCTATCGCAACAAGTTGT
CCGGCCCGCTGCTCGATCGCATCGACCTGCACCTGACCGTGGCCCGCGAGGTCACCGCCCTCAACCCCAGGCCACAACCG
GGCAACGACAGCGCCGAAGCCGCCGCCAGAGTCGCCCGGGCACGCCAGCTGCAAGGCCAGCGCCAGGGCTGTGCCAACGC
CTTTCTCGACCTGCCCGGCCTGCGGCGCCATTGCCAGTTATCCACAGCCGACGAGCACTGGCTGGAAGCGGCCTGCGAAC
GCTTGAACCTGTCGTTGCGCGCCGCTCACCGCCTGCTCAAGGTGGCCAGGACCCTGGCCGACCTGGAGCAGGCGGCAAGC
ATCAGTCGCGACCATCTGGCAGAGGCGCTGCACTATCGTCCCGGCGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comM | Vibrio campbellii strain DS40M4 |
56.566 |
99.598 |
0.563 |
| comM | Vibrio cholerae strain A1552 |
56 |
100 |
0.563 |
| comM | Glaesserella parasuis strain SC1401 |
56 |
100 |
0.563 |
| comM | Haemophilus influenzae Rd KW20 |
55.4 |
100 |
0.557 |
| comM | Legionella pneumophila str. Paris |
49.407 |
100 |
0.503 |
| comM | Legionella pneumophila strain ERS1305867 |
49.407 |
100 |
0.503 |
| RA0C_RS07335 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
45.059 |
100 |
0.459 |