Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L0B52_RS01480 Genome accession   NZ_CP090975
Coordinates   297348..298850 (-) Length   500 a.a.
NCBI ID   WP_235064768.1    Uniprot ID   -
Organism   Suttonella sp. R2A3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 292348..303850
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L0B52_RS01460 (L0B52_01460) rpiA 293853..294509 (+) 657 WP_235064764.1 ribose-5-phosphate isomerase RpiA -
  L0B52_RS01465 (L0B52_01465) - 294509..295429 (+) 921 WP_235064765.1 L-lactate dehydrogenase -
  L0B52_RS01470 (L0B52_01470) - 295430..296281 (+) 852 WP_235064766.1 alpha/beta fold hydrolase -
  L0B52_RS01475 (L0B52_01475) recF 296278..297351 (-) 1074 WP_235064767.1 DNA replication/repair protein RecF -
  L0B52_RS01480 (L0B52_01480) comM 297348..298850 (-) 1503 WP_235064768.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L0B52_RS01485 (L0B52_01485) - 298898..300184 (-) 1287 WP_235064769.1 NCS2 family permease -
  L0B52_RS01490 (L0B52_01490) mutM 300331..301155 (-) 825 WP_235064770.1 bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase -
  L0B52_RS01495 (L0B52_01495) - 301148..301594 (-) 447 WP_235064771.1 hypothetical protein -
  L0B52_RS01500 (L0B52_01500) - 301570..302898 (-) 1329 WP_235064772.1 Gldg family protein -
  L0B52_RS01505 (L0B52_01505) xerD 302937..303827 (+) 891 WP_235064773.1 site-specific tyrosine recombinase XerD -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54102.96 Da        Isoelectric Point: 8.2767

>NTDB_id=646826 L0B52_RS01480 WP_235064768.1 297348..298850(-) (comM) [Suttonella sp. R2A3]
MSLASIYSRAPLSLDAPLVRVEVHLANGLPQLALVGLPEKAVKESKDRVRAAIINSGFEFPQKRITISLAPADLPKDGAR
YDLAIALGILAASGQIPTANLEHYEWHGELALSGALRSVRGVLPCALAAYDAQRLIVVPKANAHEAALVAEDQVRPAHSL
AHIAAILHGQQDWLSQPQRGLEATTPYPDFSDVIGQQQAKRALLIAAAGAHHVLLSGPPGTGKSMLAQRFPGILPTMTRE
EAITSAAIRSISQQGFDASCWQLRPYRAPHHSSSATALVGGGSMPQPGEISLAHNGVLFLDELPEFERRVLEMLREPLEN
GHITISRALMKSDFPARFQLIAAMNPCPCGYYGDHERACSDTPDQVVRYRQRISGPLLDRIDLLIHVARYTPEQLRADTA
PQQNSATLRTQAEAARMRQIARQGCTNAQLTGKALDAHLHAAPAVFSLMDRAAAQMQLSMRAYHRLLKVARTIADLEGSA
LIAPTHAAEALQYRGWNGSA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=646826 L0B52_RS01480 WP_235064768.1 297348..298850(-) (comM) [Suttonella sp. R2A3]
ATGTCGTTAGCGAGTATCTATTCACGCGCACCGTTATCGCTTGATGCGCCATTGGTGCGTGTGGAAGTCCATCTTGCTAA
TGGCTTACCGCAGTTGGCATTAGTTGGCCTGCCGGAGAAAGCGGTCAAAGAAAGTAAAGACCGCGTACGCGCAGCGATCA
TCAACAGCGGTTTCGAATTTCCACAAAAACGCATCACCATATCGCTTGCCCCTGCTGATTTACCCAAAGACGGCGCCCGC
TATGATTTAGCGATTGCTCTAGGTATTCTTGCCGCCTCAGGGCAAATCCCAACCGCAAATTTAGAGCACTATGAATGGCA
TGGGGAATTAGCCTTATCAGGCGCGTTGCGCAGTGTGCGGGGTGTCTTGCCTTGCGCACTAGCTGCTTATGATGCTCAGC
GTTTGATTGTTGTACCAAAAGCTAATGCCCATGAAGCAGCACTGGTTGCCGAAGATCAGGTACGACCGGCACACAGCTTA
GCGCATATCGCCGCCATTTTGCATGGTCAACAAGACTGGTTAAGTCAACCACAGCGCGGCCTCGAGGCGACAACACCTTA
TCCTGATTTCAGTGATGTTATTGGCCAGCAACAAGCCAAACGCGCGTTACTCATTGCTGCAGCCGGTGCGCATCATGTGT
TACTTAGTGGTCCGCCCGGTACCGGTAAATCAATGCTTGCTCAACGCTTTCCCGGTATTTTACCAACCATGACGCGCGAA
GAAGCGATCACCAGTGCAGCGATTCGTTCGATTTCTCAACAAGGTTTTGATGCTTCATGCTGGCAATTACGCCCCTATCG
TGCGCCGCATCATAGCAGCTCGGCAACCGCGCTGGTTGGTGGCGGCAGTATGCCACAGCCAGGGGAAATTTCTTTAGCGC
ACAATGGGGTGTTATTTCTCGATGAGCTGCCGGAGTTTGAGCGTCGCGTATTAGAAATGCTACGCGAACCGCTGGAAAAT
GGACATATCACGATTTCACGTGCGTTGATGAAAAGCGATTTTCCCGCGCGTTTTCAGCTGATCGCCGCGATGAACCCCTG
CCCTTGTGGCTATTATGGCGATCATGAACGCGCCTGCAGCGACACACCGGATCAAGTCGTGCGCTACCGCCAGCGCATTT
CGGGGCCTCTGCTTGATCGTATTGATTTATTGATCCATGTTGCGCGCTACACCCCGGAACAGCTGCGTGCTGATACCGCG
CCGCAGCAAAATAGCGCAACATTACGCACACAGGCTGAAGCAGCGCGAATGCGACAAATCGCGCGTCAAGGCTGCACCAA
TGCTCAGCTGACCGGCAAGGCGCTTGATGCACATTTACACGCCGCCCCCGCAGTCTTTAGTTTGATGGATCGGGCAGCCG
CACAAATGCAGCTATCGATGCGCGCTTATCATCGCTTGCTCAAAGTCGCGCGCACGATTGCCGATTTAGAAGGATCAGCG
CTTATCGCGCCAACTCACGCAGCAGAAGCGCTACAATATCGCGGTTGGAATGGATCTGCATGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.509

99.8

0.544
  comM Vibrio campbellii strain DS40M4

53.908

99.8

0.538
  comM Glaesserella parasuis strain SC1401

52.372

100

0.53
  comM Haemophilus influenzae Rd KW20

51.594

100

0.518
  comM Legionella pneumophila str. Paris

48.611

100

0.49
  comM Legionella pneumophila strain ERS1305867

48.611

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.676

100

0.442