Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1P06_RS00290 Genome accession   NZ_CP090962
Coordinates   59377..60897 (-) Length   506 a.a.
NCBI ID   WP_015460668.1    Uniprot ID   -
Organism   Edwardsiella piscicida strain CZ12001     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 54377..65897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1P06_RS00270 (L1P06_00270) rfaF 54785..55846 (-) 1062 WP_012846963.1 ADP-heptose--LPS heptosyltransferase RfaF -
  L1P06_RS00275 (L1P06_00275) rfaD 55870..56799 (-) 930 WP_012846964.1 ADP-glyceromanno-heptose 6-epimerase -
  L1P06_RS00280 (L1P06_00280) - 57090..58286 (+) 1197 WP_015460667.1 glycine C-acetyltransferase -
  L1P06_RS00285 (L1P06_00285) tdh 58296..59321 (+) 1026 WP_012846966.1 L-threonine 3-dehydrogenase -
  L1P06_RS00290 (L1P06_00290) comM 59377..60897 (-) 1521 WP_015460668.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1P06_RS00295 (L1P06_00295) - 61185..62420 (+) 1236 WP_012846968.1 MFS transporter -
  L1P06_RS00300 (L1P06_00300) ilvL 62548..62646 (+) 99 WP_071818493.1 ilv operon leader peptide -
  L1P06_RS00305 (L1P06_00305) ilvG 62784..64433 (+) 1650 WP_015460669.1 acetolactate synthase 2 catalytic subunit -
  L1P06_RS00310 (L1P06_00310) ilvM 64430..64720 (+) 291 WP_012846970.1 acetolactate synthase 2 small subunit -
  L1P06_RS00315 (L1P06_00315) - 64773..65702 (+) 930 WP_012846971.1 branched-chain amino acid transaminase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53800.11 Da        Isoelectric Point: 8.9884

>NTDB_id=646699 L1P06_RS00290 WP_015460668.1 59377..60897(-) (comM) [Edwardsiella piscicida strain CZ12001]
MTLATVYTRAALGIQAPEVRIEAHIGNGLPGFTLVGLPETAVREAKDRVRCAMLNSGFQFPPKRITLNLAPADLPKEGGR
YDLPMALALLLASEQLAPRVSVGDYEFIGELALSGDLRSVQGALPAALSAARAKRTLIAPSDNAAELGLLAAPRPPVAPS
LLAVCAFLSGQASLETAPAGEMTSDCAGAGDMADIIGQAQARRALEIAAAGGHNLLLIGPPGTGKTMLACRLPGLLPPMT
PDEALEQAAISSLAYPGAMPPRYGMRPFRAPHHSASMAALIGGGPLPKPGEISLAHHGVLFLDELAEFDRRTLDALREPL
ESGVVHLSRARIKVSFPARVQLVAAMNPSSGGHADGRDRRAAPQQVLRYLSRLSGPLLDRFDLSIDVPPLSPGLLARQRA
DGEDSATLRRRVCAARARQYARGGRLNAHLEGAARDRDCRLAPDDALYLEQALTRLALSVRAWHRLLKVARTLADLEGCD
DIARRHLAEALSYRAMDRLLLSLQRG

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=646699 L1P06_RS00290 WP_015460668.1 59377..60897(-) (comM) [Edwardsiella piscicida strain CZ12001]
ATGACTCTGGCCACTGTATACACGCGCGCCGCCCTGGGTATTCAAGCCCCCGAAGTCCGCATTGAGGCGCATATCGGCAA
CGGCCTACCGGGCTTTACCCTGGTGGGCCTGCCGGAAACAGCCGTACGCGAAGCCAAAGATCGGGTGCGCTGCGCCATGT
TGAACAGCGGATTTCAGTTCCCGCCGAAGCGCATTACGCTGAACCTGGCACCCGCCGATCTGCCTAAGGAAGGGGGGCGC
TACGATCTGCCGATGGCGCTGGCGCTGCTGCTGGCGTCCGAACAGCTGGCCCCACGCGTATCCGTTGGCGACTATGAATT
TATCGGCGAGCTGGCCCTGTCCGGCGATCTGCGTTCAGTACAGGGGGCGCTGCCCGCCGCGCTGAGCGCCGCCCGCGCGA
AGCGCACCCTAATAGCGCCCAGTGATAACGCGGCGGAGCTCGGGCTGCTGGCAGCCCCTCGTCCCCCCGTCGCGCCGTCG
CTGCTGGCCGTCTGCGCCTTTCTGAGCGGCCAGGCATCCCTAGAGACCGCGCCGGCCGGCGAGATGACGAGCGACTGCGC
GGGCGCCGGCGATATGGCCGACATTATCGGTCAGGCGCAGGCGCGACGGGCGCTGGAGATCGCCGCCGCCGGTGGACATA
ATCTACTGCTGATCGGGCCGCCGGGCACCGGTAAAACCATGCTGGCCTGTCGCCTGCCGGGCCTGCTGCCGCCGATGACC
CCGGATGAGGCGCTAGAGCAGGCGGCCATCAGCAGCCTAGCCTACCCGGGCGCAATGCCGCCGCGCTATGGCATGCGCCC
CTTTCGCGCGCCACACCACAGCGCCTCCATGGCCGCGCTGATCGGCGGGGGGCCGCTGCCGAAGCCCGGCGAAATCTCGC
TGGCCCATCACGGCGTCCTATTTCTTGACGAGCTGGCCGAATTCGATCGGCGAACCCTGGATGCCCTGCGCGAACCGCTG
GAGTCCGGCGTCGTCCACCTGTCTCGCGCCAGGATAAAGGTCAGCTTTCCCGCCCGAGTACAGCTGGTGGCGGCCATGAA
CCCCAGCAGCGGTGGCCACGCTGACGGACGCGATCGCCGGGCGGCGCCACAGCAGGTACTAAGATACCTCTCCCGGCTGT
CCGGCCCCCTGCTTGACCGCTTCGATCTGTCGATTGATGTGCCGCCGCTGTCACCGGGACTGCTGGCTCGCCAGCGGGCG
GATGGCGAAGACAGTGCGACTCTGCGCCGACGCGTGTGCGCCGCTCGGGCGCGGCAGTACGCCCGCGGCGGCCGGCTCAA
TGCGCATCTGGAGGGTGCCGCCCGCGATCGCGACTGCCGGCTGGCGCCGGACGATGCCCTCTATCTGGAGCAGGCGCTCA
CGCGCCTGGCGCTATCGGTACGCGCTTGGCATCGGCTGCTGAAAGTCGCACGTACGCTGGCGGATCTGGAAGGATGCGAT
GACATTGCACGCCGCCATCTGGCCGAGGCGCTGAGCTACCGCGCTATGGATCGGCTACTGCTCTCCCTGCAGCGGGGCTA
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-143)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-494)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-391)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

58.449

99.407

0.581
  comM Haemophilus influenzae Rd KW20

57.199

100

0.573
  comM Vibrio campbellii strain DS40M4

57.455

99.407

0.571
  comM Glaesserella parasuis strain SC1401

55.49

100

0.559
  comM Legionella pneumophila str. Paris

46.894

98.617

0.462
  comM Legionella pneumophila strain ERS1305867

46.894

98.617

0.462
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

42.717

100

0.429