Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1F30_RS00645 Genome accession   NZ_CP090959
Coordinates   126521..128017 (-) Length   498 a.a.
NCBI ID   WP_253358263.1    Uniprot ID   -
Organism   Simiduia sp. 21SJ11W-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 121521..133017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F30_RS00635 (L1F30_00635) - 123115..124548 (-) 1434 WP_253358261.1 glycosyltransferase family 39 protein -
  L1F30_RS00640 (L1F30_00640) - 124767..126470 (+) 1704 WP_253358262.1 bifunctional diguanylate cyclase/phosphodiesterase -
  L1F30_RS00645 (L1F30_00645) comM 126521..128017 (-) 1497 WP_253358263.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1F30_RS00650 (L1F30_00650) - 128057..128284 (-) 228 WP_253358264.1 accessory factor UbiK family protein -
  L1F30_RS00655 (L1F30_00655) - 128611..129267 (+) 657 WP_253358265.1 TorF family putative porin -
  L1F30_RS00660 (L1F30_00660) - 129324..129662 (+) 339 WP_253358266.1 P-II family nitrogen regulator -
  L1F30_RS00665 (L1F30_00665) - 129699..130931 (+) 1233 WP_253358267.1 ammonium transporter -
  L1F30_RS00670 (L1F30_00670) - 131155..131493 (+) 339 WP_253358268.1 P-II family nitrogen regulator -
  L1F30_RS00675 (L1F30_00675) - 131490..132227 (-) 738 WP_253358269.1 DUF523 domain-containing protein -
  L1F30_RS00680 (L1F30_00680) - 132657..133010 (+) 354 WP_253358270.1 hypothetical protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 53325.30 Da        Isoelectric Point: 9.0082

>NTDB_id=646667 L1F30_RS00645 WP_253358263.1 126521..128017(-) (comM) [Simiduia sp. 21SJ11W-1]
MSLAIVHSRGRTGIDAPPVAVEVHLSNGLPGLAIVGLPETAVKESKDRVRSALINSHFEFPSRRITINLAPADLPKDGGR
FDLPIALGILAASGQIPPQSLAGLECMGELALSGELRGVTACLPAAIACHRAGRQLIVARANGAEAAIYAPAKALVADNL
LQVCAHLQGRAPLARAVAAPAQPATDLHDLRDVRGQPQARRALEVAAAGQHNVLFFGPPGTGKTLLASRLTGLLPPLSAE
EALDVALVHSVAGAPFNWGQRPFRHPHHTASAPALVGGGSQPKPGEISLAHRGVLFLDELPEFARPVLEVLREPIEHGEV
RIARAQAQANFPCQFQLIAAMNPCPCGYFGESRSRCRCSPDQIRRYRSRLSGPLLDRIDMHVPVRAISPEQLRGESQEEA
SAAVARRVAQARHIANARQGKPNQALSVKELEAHCTLTEQQHNFLAQAMDKLGLSIRAWHRVLRVARTLADLEGQASLSD
AHLSEALGYRRLDRPLII

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=646667 L1F30_RS00645 WP_253358263.1 126521..128017(-) (comM) [Simiduia sp. 21SJ11W-1]
ATGTCTCTCGCCATCGTTCATTCACGGGGCCGCACCGGTATTGATGCACCACCTGTGGCCGTTGAAGTGCACCTGTCAAA
CGGCCTACCGGGCCTGGCCATTGTGGGGCTGCCGGAAACCGCCGTAAAAGAAAGCAAAGACCGCGTGCGCAGCGCGCTCA
TCAACAGCCACTTCGAGTTCCCGAGCCGGCGCATCACTATTAATCTGGCACCGGCAGATTTGCCGAAAGACGGTGGCCGC
TTCGATCTACCCATTGCCCTTGGCATTCTGGCGGCCTCGGGCCAAATACCGCCGCAGTCGCTGGCGGGCCTGGAATGCAT
GGGGGAGCTTGCACTATCGGGCGAGCTGCGTGGCGTCACCGCCTGCCTGCCCGCCGCCATTGCCTGCCATCGCGCCGGCC
GGCAATTGATAGTGGCGCGCGCCAACGGCGCAGAGGCCGCCATTTACGCCCCCGCCAAGGCGTTGGTGGCCGATAACCTG
CTGCAGGTGTGCGCCCACCTGCAGGGCCGTGCACCCTTGGCCCGTGCCGTGGCCGCGCCCGCACAGCCGGCTACAGATCT
ACACGACTTACGCGATGTACGCGGCCAGCCCCAGGCGCGCCGCGCGCTCGAAGTGGCCGCCGCCGGACAGCACAATGTGC
TGTTTTTCGGCCCGCCGGGCACTGGCAAAACCCTGCTGGCCAGCAGGCTCACAGGCTTGCTGCCACCACTGAGTGCCGAG
GAAGCGCTGGATGTAGCACTGGTGCACTCGGTGGCCGGGGCGCCGTTTAACTGGGGCCAGCGGCCGTTTCGCCACCCCCA
TCACACGGCCTCGGCACCGGCGCTGGTGGGCGGCGGCTCGCAACCCAAGCCCGGCGAAATTTCATTGGCGCACCGGGGCG
TGCTGTTTCTAGACGAGCTGCCGGAATTCGCGCGGCCGGTACTGGAAGTGCTGCGCGAACCCATAGAGCACGGCGAGGTG
CGCATTGCCCGCGCCCAGGCGCAGGCCAACTTCCCTTGCCAGTTTCAGCTGATCGCCGCCATGAACCCCTGCCCGTGCGG
CTACTTTGGCGAAAGCCGCAGCCGGTGCCGCTGCTCGCCCGATCAAATTCGCCGCTACCGCAGCCGCCTGAGTGGCCCAC
TGCTAGACAGAATCGACATGCACGTGCCAGTGCGCGCCATCAGCCCGGAACAGCTGCGCGGTGAAAGCCAGGAGGAGGCC
AGTGCCGCCGTGGCGCGGCGGGTGGCCCAGGCCCGCCACATTGCCAACGCGCGCCAAGGCAAGCCCAATCAGGCGTTAAG
TGTGAAAGAGTTGGAGGCACACTGCACACTCACCGAGCAGCAGCACAATTTTCTGGCCCAGGCGATGGATAAACTGGGGC
TGTCTATCCGGGCCTGGCACCGGGTGCTGCGGGTAGCGCGCACCTTGGCAGATCTGGAGGGCCAAGCCTCTTTAAGCGAT
GCCCACTTGAGCGAAGCACTGGGCTACCGCCGGCTAGACAGGCCGCTGATTATTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-391)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-490)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

55.888

100

0.562
  comM Vibrio campbellii strain DS40M4

55.378

100

0.558
  comM Glaesserella parasuis strain SC1401

53.333

100

0.546
  comM Haemophilus influenzae Rd KW20

52.871

100

0.536
  comM Legionella pneumophila str. Paris

53.293

100

0.536
  comM Legionella pneumophila strain ERS1305867

53.293

100

0.536
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.665

100

0.45