Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   OHS33_RS12685 Genome accession   NZ_CP107819
Coordinates   2942053..2942703 (+) Length   216 a.a.
NCBI ID   WP_330330504.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_00536     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2937053..2947703
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHS33_RS12680 (OHS33_12685) - 2937761..2941891 (-) 4131 WP_330330503.1 PA14 domain-containing protein -
  OHS33_RS12685 (OHS33_12690) vraR 2942053..2942703 (+) 651 WP_330330504.1 response regulator transcription factor Regulator
  OHS33_RS12690 (OHS33_12695) - 2942799..2943053 (-) 255 WP_330330505.1 LysR family transcriptional regulator -
  OHS33_RS12695 (OHS33_12700) - 2943239..2945779 (-) 2541 WP_330330506.1 FtsX-like permease family protein -
  OHS33_RS12700 (OHS33_12705) - 2945779..2946567 (-) 789 WP_330330507.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 23281.02 Da        Isoelectric Point: 6.0170

>NTDB_id=646576 OHS33_RS12685 WP_330330504.1 2942053..2942703(+) (vraR) [Streptomyces sp. NBC_00536]
MTIRILLADDQESVRMGFRLILDSQPDMEVVGEAVDGLQAVELAGILRPDVVLADIRMPRLDGLEVTRRLAGPEVADPVR
VVVVTTFDLDEYVHTALHNGACGFLLKRSGPALLVEAVRAAVAGDTMISPSVTVRLLKHLQSPVKPKSAALIESLTDRET
EIARLVAKGLTNAEIGTELFISAGTAKTHVAHIQRKLDVRNRVGIAAWVWDSGLAA

Nucleotide


Download         Length: 651 bp        

>NTDB_id=646576 OHS33_RS12685 WP_330330504.1 2942053..2942703(+) (vraR) [Streptomyces sp. NBC_00536]
GTGACCATCCGCATACTTCTCGCCGACGACCAGGAATCCGTTCGCATGGGATTCCGCCTGATCCTGGATTCCCAGCCGGA
CATGGAAGTCGTCGGCGAAGCCGTGGACGGCCTGCAGGCCGTCGAACTCGCCGGAATCCTGCGGCCGGACGTGGTGCTCG
CCGACATCCGCATGCCGCGCCTGGACGGTCTGGAGGTCACCCGCAGACTCGCCGGCCCCGAGGTCGCCGACCCGGTGCGG
GTGGTCGTGGTGACCACCTTCGACCTCGACGAGTACGTCCACACCGCGCTCCACAACGGGGCGTGCGGCTTCCTGCTGAA
ACGGTCGGGACCCGCGCTGCTGGTGGAGGCGGTACGCGCCGCCGTGGCGGGCGACACCATGATCAGCCCTTCCGTCACGG
TCCGCCTGCTGAAGCACCTGCAGAGCCCGGTGAAGCCCAAGTCGGCCGCTCTGATCGAGTCGTTGACGGACCGCGAGACG
GAGATAGCGCGCCTGGTGGCCAAGGGGCTGACGAACGCGGAGATCGGCACCGAGCTGTTCATCTCGGCGGGCACCGCCAA
GACCCACGTCGCCCACATCCAGCGCAAGCTCGATGTGCGCAACCGGGTCGGGATCGCGGCCTGGGTGTGGGACAGCGGCC
TGGCGGCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(5-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

36.111

100

0.361