Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   L1F17_RS25250 Genome accession   NZ_CP090908
Coordinates   5249173..5250696 (+) Length   507 a.a.
NCBI ID   WP_060557935.1    Uniprot ID   -
Organism   Serratia marcescens strain Sys06     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 5244173..5255696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F17_RS25225 (L1F17_25225) - 5244374..5245300 (-) 927 WP_004929958.1 branched-chain amino acid transaminase -
  L1F17_RS25230 (L1F17_25230) ilvM 5245324..5245581 (-) 258 WP_004929955.1 acetolactate synthase 2 small subunit -
  L1F17_RS25235 (L1F17_25235) ilvG 5245578..5247224 (-) 1647 WP_033631835.1 acetolactate synthase 2 catalytic subunit -
  L1F17_RS25240 (L1F17_25240) ilvL 5247367..5247465 (-) 99 WP_013814970.1 ilv operon leader peptide -
  L1F17_RS25245 (L1F17_25245) - 5247599..5248831 (-) 1233 WP_048326472.1 MFS transporter -
  L1F17_RS25250 (L1F17_25250) comM 5249173..5250696 (+) 1524 WP_060557935.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  L1F17_RS25255 (L1F17_25255) - 5250724..5251062 (-) 339 WP_033631832.1 DUF413 domain-containing protein -
  L1F17_RS25260 (L1F17_25260) hdfR 5251182..5252009 (+) 828 WP_033631831.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 507 a.a.        Molecular weight: 54572.76 Da        Isoelectric Point: 7.4335

>NTDB_id=646367 L1F17_RS25250 WP_060557935.1 5249173..5250696(+) (comM) [Serratia marcescens strain Sys06]
MSLALIYSRAIIGVQAPSVTVEVHISNGLPGLTLVGLPETTVKEARDRVRSALINSGFTFPARRITVNLAPADLPKEGGR
YDLPIALAILAASEQLPLAPLARYEFLGELALSGALRAVRGAIPAALAAADARRQLILSTDNAAEVGLIAQSHSHTAQHL
LEVCAFLLGQSELPVAATPPDADNACENADLRDIIGQEQAKRALEIAAAGGHNLLLIGPPGTGKTMLASRLTGLLPPLTE
AEALESLAIASLQHHIPAALPWRQRPFRAPHHSASMAALVGGGSLPRPGEISMAHNGVLFLDELPEFERKVLDALREPLE
SGEIVISRANAKVCFPARVQLIAAMNPSPTGHYQGLHNRASPQQVLRYLARLSGPFLDRFDLSIEVPLLPPGTLSHRKTH
GESSEQVRKRVQQARARQLERAGKVNALLSNREVERDCVLQAADAEFLEATLNTLGLSVRAWQRILKVARTLADLAGDAE
LDRHHLSEALGYRSMDRLLLQLHRSLE

Nucleotide


Download         Length: 1524 bp        

>NTDB_id=646367 L1F17_RS25250 WP_060557935.1 5249173..5250696(+) (comM) [Serratia marcescens strain Sys06]
ATGTCACTGGCGTTAATCTATAGCCGCGCCATCATCGGCGTTCAGGCCCCTTCCGTGACGGTGGAGGTGCATATCAGCAA
TGGCCTGCCCGGCCTGACGCTGGTCGGCCTGCCGGAAACCACGGTAAAAGAGGCGCGCGATCGGGTGCGCAGCGCCCTGA
TCAACAGCGGTTTCACCTTTCCCGCCCGGCGCATCACTGTCAATTTGGCGCCCGCCGATCTGCCGAAAGAAGGCGGGCGT
TACGATCTGCCAATAGCGCTGGCGATCCTCGCCGCCTCCGAGCAATTGCCCCTCGCACCGTTGGCACGCTACGAGTTTCT
TGGCGAGCTCGCGCTGTCTGGCGCACTGCGCGCGGTCAGAGGTGCTATCCCGGCGGCGCTGGCGGCGGCTGACGCCAGGC
GACAATTGATCCTGTCGACGGACAACGCCGCCGAAGTCGGCCTGATCGCGCAGTCGCACTCCCATACCGCCCAACACCTG
CTGGAAGTCTGCGCTTTTCTGCTCGGCCAAAGCGAACTGCCGGTGGCGGCCACGCCCCCCGACGCGGACAACGCGTGCGA
AAACGCCGACCTGCGCGACATCATCGGCCAGGAACAGGCCAAGCGGGCATTAGAGATCGCCGCCGCCGGCGGGCATAACC
TGCTGTTGATTGGGCCACCGGGCACCGGTAAAACCATGCTGGCCAGCCGTCTCACGGGCTTGCTGCCGCCGCTGACGGAG
GCTGAGGCGCTGGAAAGCCTGGCGATCGCCAGCTTGCAGCATCATATTCCCGCCGCTCTACCATGGCGTCAGAGGCCGTT
CCGCGCACCGCACCACAGCGCCTCGATGGCGGCATTGGTCGGCGGCGGCTCACTGCCGCGACCGGGTGAGATCTCGATGG
CGCATAACGGCGTGCTGTTTCTGGATGAACTGCCGGAATTCGAGCGTAAGGTACTGGATGCGCTGCGTGAGCCGTTGGAA
TCCGGCGAGATCGTGATTTCACGTGCCAACGCCAAGGTCTGTTTCCCCGCCAGGGTGCAACTGATCGCGGCAATGAACCC
CAGCCCGACAGGGCATTATCAGGGATTGCACAATCGCGCCTCACCGCAGCAGGTGTTGCGCTATCTGGCCCGGCTGTCAG
GGCCTTTTCTCGACCGTTTCGATCTGTCTATCGAAGTACCGTTGTTGCCGCCGGGTACGCTCAGTCATCGGAAAACCCAT
GGAGAAAGCAGCGAACAAGTACGGAAAAGGGTGCAGCAGGCACGCGCCCGGCAGCTCGAACGCGCCGGTAAAGTCAACGC
GCTGTTGAGCAACCGCGAAGTGGAACGAGATTGCGTTTTGCAGGCGGCTGACGCCGAGTTTTTGGAAGCAACATTAAACA
CGCTGGGGTTATCGGTTCGCGCCTGGCAGCGCATCTTGAAAGTGGCGCGCACGCTGGCGGATTTGGCGGGAGATGCTGAA
CTCGACAGGCACCACCTCAGCGAAGCACTGGGCTATCGCAGTATGGACCGTCTGCTGTTACAACTGCATCGCAGTCTGGA
ATGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(401-493)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

65.81

99.803

0.657
  comM Glaesserella parasuis strain SC1401

65.422

100

0.657
  comM Vibrio cholerae strain A1552

65.936

99.014

0.653
  comM Vibrio campbellii strain DS40M4

64.542

99.014

0.639
  comM Legionella pneumophila str. Paris

51.205

98.225

0.503
  comM Legionella pneumophila strain ERS1305867

51.205

98.225

0.503
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.079

100

0.452