Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   L1F17_RS23710 Genome accession   NZ_CP090908
Coordinates   4916657..4917187 (-) Length   176 a.a.
NCBI ID   WP_004936793.1    Uniprot ID   A0AAW6X7L8
Organism   Serratia marcescens strain Sys06     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4911657..4922187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1F17_RS23680 (L1F17_23680) - 4912200..4912643 (-) 444 WP_033631983.1 lipocalin-like domain-containing protein -
  L1F17_RS23685 (L1F17_23685) - 4912839..4913099 (+) 261 WP_033631982.1 YdgH/BhsA/McbA-like domain containing protein -
  L1F17_RS23690 (L1F17_23690) - 4913155..4914072 (-) 918 WP_033631981.1 LysR family transcriptional regulator -
  L1F17_RS23695 (L1F17_23695) - 4914200..4914949 (+) 750 WP_060560373.1 3-oxoacyl-ACP reductase family protein -
  L1F17_RS23700 (L1F17_23700) - 4915183..4915395 (+) 213 WP_004936800.1 DUF1471 domain-containing protein -
  L1F17_RS23705 (L1F17_23705) - 4915615..4916571 (+) 957 WP_033631979.1 cyclase family protein -
  L1F17_RS23710 (L1F17_23710) ssb 4916657..4917187 (-) 531 WP_004936793.1 single-stranded DNA-binding protein SSB1 Machinery gene
  L1F17_RS23715 (L1F17_23715) uvrA 4917465..4920293 (+) 2829 WP_060560374.1 excinuclease ABC subunit UvrA -
  L1F17_RS23720 (L1F17_23720) - 4920523..4921575 (+) 1053 WP_060560375.1 NAD(P)-dependent alcohol dehydrogenase -
  L1F17_RS23725 (L1F17_23725) maa 4921607..4922164 (-) 558 WP_060560376.1 maltose O-acetyltransferase -

Sequence

Protein


Download         Length: 176 a.a.        Molecular weight: 18808.71 Da        Isoelectric Point: 5.2358

>NTDB_id=646365 L1F17_RS23710 WP_004936793.1 4916657..4917187(-) (ssb) [Serratia marcescens strain Sys06]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEQKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGSLQTRKWQDQSGQDRYTTEIVVNVGGTMQMLGGRQGGGAPAGQSAGGQGGWGQPQQPQGGNQFSGGQQQSRPAQNSAP
ATSNEPPMDFDDDIPF

Nucleotide


Download         Length: 531 bp        

>NTDB_id=646365 L1F17_RS23710 WP_004936793.1 4916657..4917187(-) (ssb) [Serratia marcescens strain Sys06]
ATGGCCAGCAGAGGCGTAAACAAAGTAATTCTGGTCGGGAATCTGGGTCAGGATCCAGAAGTCCGTTACATGCCGAACGG
CGGCGCAGTGGCCAACATTACCCTGGCGACCTCCGAAAGCTGGCGTGACAAGGCGACCGGCGAACAGAAAGAGAAGACCG
AATGGCACCGCGTCGTGCTGTTCGGCAAACTGGCCGAAGTGGCGGGTGAATACCTGCGTAAAGGCTCTCAGGTCTACATC
GAAGGCTCCCTGCAGACCCGTAAATGGCAGGATCAGAGCGGTCAGGATCGCTACACCACCGAGATCGTGGTTAACGTCGG
CGGCACCATGCAGATGCTGGGCGGCCGTCAGGGCGGCGGCGCACCGGCCGGTCAATCTGCCGGCGGCCAGGGCGGTTGGG
GCCAACCTCAGCAGCCACAGGGCGGCAACCAGTTCAGCGGCGGCCAGCAGCAGTCTCGCCCGGCGCAGAACAGCGCACCG
GCGACCAGCAACGAACCACCAATGGATTTCGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

76.243

100

0.784
  ssb Glaesserella parasuis strain SC1401

59.14

100

0.625
  ssb Neisseria meningitidis MC58

46.591

100

0.466
  ssb Neisseria gonorrhoeae MS11

46.591

100

0.466
  ssbA Bacillus subtilis subsp. subtilis str. 168

36.158

100

0.364